Strain identifier

BacDive ID: 148594

Type strain: No

Species: Nocardia farcinica

NCBI tax ID(s): 37329 (species)

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General

@ref: 52915

BacDive-ID: 148594

keywords: Bacteria

description: Nocardia farcinica CCUG 35683 is a bacterium that was isolated from Human blood,liver disease,transplantation foreseen.

NCBI tax id

  • NCBI tax id: 37329
  • Matching level: species

doi: 10.13145/bacdive148594.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia farcinica
  • full scientific name: Nocardia farcinica Trevisan 1889 (Approved Lists 1980)

@ref: 52915

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Nocardia

species: Nocardia farcinica

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea+hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase-
68379urease+3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • @reffatty acidpercentageECL
    52915C14:0114
    52915C16:018.716
    52915C18:08.218
    52915C20:01.620
    52915C16:1 ω7c/C15:0 ISO 2OH16.815.85
    52915C18:1 ω9c817.769
    52915C18:2 ω6,9c/C18:0 ANTE5.717.724
    52915C19:1 ω11c/19:1 ω9c118.762
    52915C20:1 ω9c3.119.77
    52915C20:4 ω6,9,12,15c119.395
    52915TBSA 10Me18:015.218.392
    52915Unidentified5.516.976
    52915Unidentified1.118.556
    52915unknown 14.96613.114.966
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    52915C14:00.814
    52915C16:018.716
    52915C17:04.617
    52915C18:09.318
    52915C19:00.519
    52915C20:02.120
    52915C16:0 2OH0.317.233
    52915C16:1 ω7c alcohol0.315.386
    52915C16:1 ω7c/C15:0 ISO 2OH15.115.85
    52915C16:1 ω9c0.415.774
    52915C17:1 ω9c0.516.773
    52915C18:1 ω9c5.717.769
    52915C18:2 ω6,9c/C18:0 ANTE6.317.724
    52915C19:1 ω11c/19:1 ω9c118.762
    52915C20:1 ω9c4.419.77
    52915C20:4 ω6,9,12,15c0.919.395
    52915TBSA 10Me18:017.618.392
    52915Unidentified0.313.243
    52915Unidentified0.518.559
    52915unknown 14.96610.914.966
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
52915++-+--+-++----------+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
52915-+++-+----++---++---

Isolation, sampling and environmental information

isolation

  • @ref: 52915
  • sample type: Human blood,liver disease,transplantation foreseen
  • sampling date: 1996-04-19
  • geographic location: Karlskrona
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood
#Infection#Patient

External links

@ref: 52915

culture collection no.: CCUG 35683

straininfo link

  • @ref: 103130
  • straininfo: 55979

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
52915Curators of the CCUGhttps://www.ccug.se/strain?id=35683Culture Collection University of Gothenburg (CCUG) (CCUG 35683)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
103130Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID55979.1