Strain identifier

BacDive ID: 14851

Type strain: Yes

Species: Kitasatospora azatica

Strain history: IFO 13803 <-- J. Awaya OS-3256.

NCBI tax ID(s): 1449346 (strain), 58347 (species)

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General

@ref: 10427

BacDive-ID: 14851

DSM-Number: 41650

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Kitasatospora azatica DSM 41650 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

NCBI tax idMatching level
58347species
1449346strain

strain history

@refhistory
10427<- IFO <- Kitosato Inst. (J. Awaya OS-3256)
67770IFO 13803 <-- J. Awaya OS-3256.

doi: 10.13145/bacdive14851.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Kitasatospora
  • species: Kitasatospora azatica
  • full scientific name: Kitasatospora azatica corrig. (Nakagaito et al. 1993) Zhang et al. 1997

  • synonyms

    @refsynonym
    20215Kitasatosporia azatica
    20215Streptomyces azaticus

@ref: 10427

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Kitasatospora

species: Kitasatospora azatica

full scientific name: Kitasatospora azatica (Nakagaito et al. 1993) Zhang et al. 1997 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.944
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10427ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10427GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10427positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes99.999

compound production

@refcompound
10427alazopeptin
20216Alazopeptin

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H8)

metabolite production

  • @ref: 67770
  • metabolite: alazopeptin
  • production: yes

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
10427soil
67770Soilsuburbs of TokyoJapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_1375.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_148;97_159;98_177;99_1375&stattab=map
  • Last taxonomy: Kitasatospora
  • 16S sequence: U93312
  • Sequence Identity:
  • Total samples: 1391
  • soil counts: 1166
  • aquatic counts: 19
  • animal counts: 107
  • plant counts: 99

Safety information

risk assessment

  • @ref: 10427
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Kitasatosporia azaticus strain IFO13803 16S ribosomal RNA gene, partial sequenceU933121481ena58347
20218Kitasatosporia azaticus strain IFO13803 16S-23S rRNA gene spacer, partial sequenceU93313278ena58347
20218Kitasatospora azatica gene for 16S rRNA, partial sequence, strain: NBRC 13803AB1844941473ena58347

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kitasatospora azatica KCTC 96991449346.3wgspatric1449346
66792Kitasatospora azatica KCTC 96992574179793draftimg1449346
67770Kitasatospora azatica KCTC 9699GCA_000744785contigncbi1449346

GC content

@refGC-contentmethod
6777071.6genome sequence analysis
6777070.5high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno94.969no
gram-positiveyes90.313no
anaerobicno99.236no
halophileno94.278no
spore-formingyes92.314no
glucose-utilyes90.078no
thermophileno98.192yes
aerobicyes90.098no
flagellatedno98.244no
glucose-fermentno87.286no

External links

@ref: 10427

culture collection no.: DSM 41650, ATCC 51237, IFO 13803, NBRC 13803, JCM 8798, ATCC 29755, CGMCC 4.1663, IAM 15163, KACC 20223, KCTC 9699, MTCC 703

straininfo link

  • @ref: 83964
  • straininfo: 39697

literature

  • topic: Phylogeny
  • Pubmed-ID: 32924916
  • title: Kitasatospora acidiphila sp. nov., isolated from pine grove soil, exhibiting antimicrobial potential.
  • authors: Kim MJ, Roh SG, Kim MK, Park C, Kim S, Kim SB
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004450
  • year: 2020
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Forests, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Pinus/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Streptomycetaceae/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10427Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41650)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41650
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83964Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID39697.1StrainInfo: A central database for resolving microbial strain identifiers