Strain identifier

BacDive ID: 148405

Type strain: No

Species: Proteus vulgaris

Strain Designation: HSCT 3586 T1, 1404-81

Strain history: CIP <- 2001, C. Mohr O'Hara, CDC, Atlanta, Georgia, USA: strain 1404-81 <- J. Penner: strain HSCT 3586 T1

NCBI tax ID(s): 585 (species)

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General

@ref: 52693

BacDive-ID: 148405

keywords: genome sequence, Bacteria, facultative anaerobe, Gram-negative

description: Proteus vulgaris HSCT 3586 T1 is a facultative anaerobe, Gram-negative bacterium that was isolated from Human urine.

NCBI tax id

  • NCBI tax id: 585
  • Matching level: species

strain history

  • @ref: 119595
  • history: CIP <- 2001, C. Mohr O'Hara, CDC, Atlanta, Georgia, USA: strain 1404-81 <- J. Penner: strain HSCT 3586 T1

doi: 10.13145/bacdive148405.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Proteus
  • species: Proteus vulgaris
  • full scientific name: Proteus vulgaris Hauser 1885 (Approved Lists 1980)

@ref: 52693

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Morganellaceae

genus: Proteus

species: Proteus vulgaris

strain designation: HSCT 3586 T1, 1404-81

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
125438negative99.985
125439negative91.5
119595negativerod-shapedyes

Culture and growth conditions

culture medium

  • @ref: 119595
  • name: CIP Medium 72
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
119595positivegrowth30-41
119595nogrowth5
119595nogrowth10

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
119595facultative anaerobe
125439obligate aerobe96.1

spore formation

@refspore formationconfidence
125438no90.374
125439no98

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11959529864mannitol-fermentation
11959517234glucose+fermentation
11959517716lactose-fermentation
11959517632nitrate+reduction
11959516301nitrite-reduction
11959515792malonate-assimilation
119595132112sodium thiosulfate+builds gas from
11959517234glucose+degradation

antibiotic resistance

  • @ref: 119595
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 119595
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11959515688acetoin-
11959517234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
119595oxidase-
119595beta-galactosidase-3.2.1.23
119595alcohol dehydrogenase-1.1.1.1
119595gelatinase+
119595catalase+1.11.1.6
119595lysine decarboxylase-4.1.1.18
119595ornithine decarboxylase-4.1.1.17
119595phenylalanine ammonia-lyase+4.3.1.24
119595tryptophan deaminase+
119595urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119595-+++-+--+-++---+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119595+-+----+-++--------+-++--------+--++-------------+--------+++--------------+--+++--------++++++---+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
52693Human urine
119595Human, UrineToronto, OntarioCanadaCANNorth America1979

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Urine

Safety information

risk assessment

  • @ref: 119595
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Proteus terrae subsp. terrae ATCC 51470GCA_003144335contigncbi1311789
66792Proteus genomosp. 5 str. ATCC 514701311789.3wgspatric1311789
66792Proteus genomosp. 5 ATCC 514702921503015draftimg1311789

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno99.985no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no93.074yes
125438spore-formingspore-formingAbility to form endo- or exosporesno90.374no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no78.253yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno98.697no
125438motile2+flagellatedAbility to perform flagellated movementyes72.716no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno98
125439BacteriaNetmotilityAbility to perform movementno55.5
125439BacteriaNetgram_stainReaction to gram-stainingnegative91.5
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe96.1

External links

@ref: 52693

culture collection no.: CCUG 35385, ATCC 51470, CIP 106870

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
52693Curators of the CCUGhttps://www.ccug.se/strain?id=35385Culture Collection University of Gothenburg (CCUG) (CCUG 35385)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
119595Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106870Collection of Institut Pasteur (CIP 106870)
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG