Strain identifier

BacDive ID: 148405

Type strain: No

Species: Proteus vulgaris

Strain Designation: HSCT 3586 T1, 1404-81

Strain history: CIP <- 2001, C. Mohr O'Hara, CDC, Atlanta, Georgia, USA: strain 1404-81 <- J. Penner: strain HSCT 3586 T1

NCBI tax ID(s): 585 (species)

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General

@ref: 52693

BacDive-ID: 148405

keywords: genome sequence, Bacteria, facultative anaerobe, motile

description: Proteus vulgaris HSCT 3586 T1 is a facultative anaerobe, motile bacterium that was isolated from Human urine.

NCBI tax id

  • NCBI tax id: 585
  • Matching level: species

strain history

  • @ref: 119595
  • history: CIP <- 2001, C. Mohr O'Hara, CDC, Atlanta, Georgia, USA: strain 1404-81 <- J. Penner: strain HSCT 3586 T1

doi: 10.13145/bacdive148405.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Proteus
  • species: Proteus vulgaris
  • full scientific name: Proteus vulgaris Hauser 1885 (Approved Lists 1980)

@ref: 52693

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Morganellaceae

genus: Proteus

species: Proteus vulgaris

strain designation: HSCT 3586 T1, 1404-81

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes96.464
6948099.953negative
119595yesnegativerod-shaped

Culture and growth conditions

culture medium

  • @ref: 119595
  • name: CIP Medium 72
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
119595positivegrowth30-41
119595nogrowth5psychrophilic
119595nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119595
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69480no99.397
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11959529864mannitol-fermentation
11959517234glucose+fermentation
11959517716lactose-fermentation
11959517632nitrate+reduction
11959516301nitrite-reduction
11959515792malonate-assimilation
119595132112sodium thiosulfate+builds gas from
11959517234glucose+degradation

antibiotic resistance

  • @ref: 119595
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 119595
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11959515688acetoin-
11959517234glucose+

enzymes

@refvalueactivityec
119595oxidase-
119595beta-galactosidase-3.2.1.23
119595alcohol dehydrogenase-1.1.1.1
119595gelatinase+
119595catalase+1.11.1.6
119595lysine decarboxylase-4.1.1.18
119595ornithine decarboxylase-4.1.1.17
119595phenylalanine ammonia-lyase+4.3.1.24
119595tryptophan deaminase+
119595urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119595-+++-+--+-++---+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119595+-+----+-++--------+-++--------+--++-------------+--------+++--------------+--+++--------++++++---+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
52693Human urine
119595Human, UrineToronto, OntarioCanadaCANNorth America1979

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Urine

Safety information

risk assessment

  • @ref: 119595
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Proteus terrae subsp. terrae ATCC 51470GCA_003144335contigncbi1311789
66792Proteus genomosp. 5 str. ATCC 514701311789.3wgspatric1311789
66792Proteus genomosp. 5 ATCC 514702921503015draftimg1311789

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes91.165no
gram-positiveno98.619no
anaerobicno97.806no
halophileno82.824no
spore-formingno96.695no
glucose-utilyes88.956no
aerobicyes52.411no
flagellatedyes77.406no
thermophileno99.106no
glucose-fermentyes89.453no

External links

@ref: 52693

culture collection no.: CCUG 35385, ATCC 51470, CIP 106870

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
52693Curators of the CCUGhttps://www.ccug.se/strain?id=35385Culture Collection University of Gothenburg (CCUG) (CCUG 35385)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
119595Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106870Collection of Institut Pasteur (CIP 106870)