Strain identifier

BacDive ID: 148404

Type strain: No

Species: Proteus vulgaris

Strain Designation: 8385-93, 111B

Strain history: CIP <- 2001, C. Mohr O'Hara, CDC, Atlanta, USA, strain: 8385-93 <- P. Hawkey: strain 111B <- Bristol Gen. Hosp., UK

NCBI tax ID(s): 585 (species)

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General

@ref: 52692

BacDive-ID: 148404

keywords: genome sequence, Bacteria, facultative anaerobe, motile

description: Proteus vulgaris 8385-93 is a facultative anaerobe, motile bacterium that was isolated from Human urine.

NCBI tax id

  • NCBI tax id: 585
  • Matching level: species

strain history

  • @ref: 119594
  • history: CIP <- 2001, C. Mohr O'Hara, CDC, Atlanta, USA, strain: 8385-93 <- P. Hawkey: strain 111B <- Bristol Gen. Hosp., UK

doi: 10.13145/bacdive148404.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Proteus
  • species: Proteus vulgaris
  • full scientific name: Proteus vulgaris Hauser 1885 (Approved Lists 1980)

@ref: 52692

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Morganellaceae

genus: Proteus

species: Proteus vulgaris

strain designation: 8385-93, 111B

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes96.31
6948099.946negative
119594yesnegativerod-shaped

Culture and growth conditions

culture medium

  • @ref: 119594
  • name: CIP Medium 72
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 119594
  • growth: positive
  • type: growth
  • temperature: 5-41

Physiology and metabolism

oxygen tolerance

  • @ref: 119594
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69480no99.425
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11959429864mannitol-fermentation
11959416947citrate-carbon source
11959417234glucose+fermentation
11959417716lactose-fermentation
11959417632nitrate+reduction
11959416301nitrite-reduction
11959415792malonate-assimilation
119594132112sodium thiosulfate+builds gas from
11959417234glucose+degradation

antibiotic resistance

  • @ref: 119594
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 119594
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11959415688acetoin-
11959417234glucose+

enzymes

@refvalueactivityec
119594oxidase-
119594beta-galactosidase-3.2.1.23
119594alcohol dehydrogenase-1.1.1.1
119594gelatinase+
119594catalase+1.11.1.6
119594lysine decarboxylase-4.1.1.18
119594ornithine decarboxylase-4.1.1.17
119594phenylalanine ammonia-lyase+4.3.1.24
119594tryptophan deaminase+
119594urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119594-++--+--+-++---+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119594+++++--+-++--+-++--+-+++-------+--++-------------+---------++--------------+---++-+------+++--++--+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
52692Human urineBristolUnited KingdomGBREurope
119594Human, UrineBristolUnited KingdomGBREurope1984

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Urine

Safety information

risk assessment

  • @ref: 119594
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Proteus genomosp. 4 str. ATCC 51469GCA_003144375contigncbi1311819
66792Proteus genomosp. 4 str. ATCC 514691311819.3wgspatric1311819
66792Proteus genomosp. 4 ATCC 514692885184831draftimg1311819

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.618no
gram-positiveno98.558no
anaerobicno96.47no
halophileno89.813no
spore-formingno96.044no
glucose-utilyes90.461no
flagellatedyes74.632no
thermophileno98.924no
aerobicno51.819no
glucose-fermentyes89.946no

External links

@ref: 52692

culture collection no.: CCUG 35384, ATCC 51469, CIP 106869

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
52692Curators of the CCUGhttps://www.ccug.se/strain?id=35384Culture Collection University of Gothenburg (CCUG) (CCUG 35384)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
119594Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106869Collection of Institut Pasteur (CIP 106869)