Strain identifier

BacDive ID: 148403

Type strain: No

Species: Proteus vulgaris

Strain Designation: 87B, 8390-93

Strain history: CIP <- 2001, C. Mohr O'Hara, CDC, Atlanta, GA, USA, strain: 8390-93 <- P. Hawkey: strain 87B <- Bristol Children's Hosp., UK

NCBI tax ID(s): 585 (species)

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General

@ref: 52691

BacDive-ID: 148403

keywords: genome sequence, Bacteria, facultative anaerobe, motile

description: Proteus vulgaris 87B is a facultative anaerobe, motile bacterium that was isolated from Human urine.

NCBI tax id

  • NCBI tax id: 585
  • Matching level: species

strain history

  • @ref: 119596
  • history: CIP <- 2001, C. Mohr O'Hara, CDC, Atlanta, GA, USA, strain: 8390-93 <- P. Hawkey: strain 87B <- Bristol Children's Hosp., UK

doi: 10.13145/bacdive148403.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Proteus
  • species: Proteus vulgaris
  • full scientific name: Proteus vulgaris Hauser 1885 (Approved Lists 1980)

@ref: 52691

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Morganellaceae

genus: Proteus

species: Proteus vulgaris

strain designation: 87B, 8390-93

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes96.408
6948099.927negative
119596yesnegativerod-shaped

Culture and growth conditions

culture medium

  • @ref: 119596
  • name: CIP Medium 72
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
119596positivegrowth10-41
119596nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119596
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69480no99.615
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11959629864mannitol-fermentation
11959617234glucose+fermentation
11959617716lactose-fermentation
11959617632nitrate+reduction
11959616301nitrite-reduction
11959615792malonate-assimilation
119596132112sodium thiosulfate+builds gas from
11959617234glucose+degradation

antibiotic resistance

  • @ref: 119596
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 119596
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11959615688acetoin-
11959617234glucose+

enzymes

@refvalueactivityec
119596oxidase-
119596beta-galactosidase-3.2.1.23
119596alcohol dehydrogenase-1.1.1.1
119596gelatinase+
119596catalase+1.11.1.6
119596lysine decarboxylase-4.1.1.18
119596ornithine decarboxylase-4.1.1.17
119596phenylalanine ammonia-lyase+4.3.1.24
119596tryptophan deaminase+
119596urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119596-+-+++--+-++---+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119596+-++---+-++--------+-++--------+--++-------------+------+-+++--------------+--+++--------++++++---+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
52691Human urineBristolUnited KingdomGBREurope
119596Human, UrineBristolUnited KingdomGBREurope1984

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Urine

Safety information

risk assessment

  • @ref: 119596
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Proteus genomosp. 6 str. ATCC 51471GCA_003144505contigncbi1311821
66792Proteus genomosp. 6 str. ATCC 514711311821.3wgspatric1311821
66792Proteus genomosp. 6 ATCC 514712885172688draftimg1311821

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes89.053no
gram-positiveno98.774no
anaerobicno96.756no
halophileno92.675no
spore-formingno96.311no
glucose-utilyes90.867no
flagellatedyes75.935no
thermophileno98.786no
aerobicno51.863no
glucose-fermentyes90.524no

External links

@ref: 52691

culture collection no.: CCUG 35381, ATCC 51471, CIP 106871

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
52691Curators of the CCUGhttps://www.ccug.se/strain?id=35381Culture Collection University of Gothenburg (CCUG) (CCUG 35381)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
119596Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106871Collection of Institut Pasteur (CIP 106871)