Strain identifier

BacDive ID: 148403

Type strain: No

Species: Proteus vulgaris

Strain Designation: 87B, 8390-93

Strain history: CIP <- 2001, C. Mohr O'Hara, CDC, Atlanta, GA, USA, strain: 8390-93 <- P. Hawkey: strain 87B <- Bristol Children's Hosp., UK

NCBI tax ID(s): 585 (species)

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General

@ref: 52691

BacDive-ID: 148403

keywords: genome sequence, Bacteria, facultative anaerobe, Gram-negative

description: Proteus vulgaris 87B is a facultative anaerobe, Gram-negative bacterium that was isolated from Human urine.

NCBI tax id

  • NCBI tax id: 585
  • Matching level: species

strain history

  • @ref: 119596
  • history: CIP <- 2001, C. Mohr O'Hara, CDC, Atlanta, GA, USA, strain: 8390-93 <- P. Hawkey: strain 87B <- Bristol Children's Hosp., UK

doi: 10.13145/bacdive148403.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Proteus
  • species: Proteus vulgaris
  • full scientific name: Proteus vulgaris Hauser 1885 (Approved Lists 1980)

@ref: 52691

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Morganellaceae

genus: Proteus

species: Proteus vulgaris

strain designation: 87B, 8390-93

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
125438negative99.985
125439negative98.2
119596negativerod-shapedyes

Culture and growth conditions

culture medium

  • @ref: 119596
  • name: CIP Medium 72
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
119596positivegrowth10-41
119596nogrowth5

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
119596facultative anaerobe
125439obligate aerobe97

spore formation

@refspore formationconfidence
125438no90.731
125439no98.3

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11959629864mannitol-fermentation
11959617234glucose+fermentation
11959617716lactose-fermentation
11959617632nitrate+reduction
11959616301nitrite-reduction
11959615792malonate-assimilation
119596132112sodium thiosulfate+builds gas from
11959617234glucose+degradation

antibiotic resistance

  • @ref: 119596
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 119596
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11959615688acetoin-
11959617234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)+
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
119596oxidase-
119596beta-galactosidase-3.2.1.23
119596alcohol dehydrogenase-1.1.1.1
119596gelatinase+
119596catalase+1.11.1.6
119596lysine decarboxylase-4.1.1.18
119596ornithine decarboxylase-4.1.1.17
119596phenylalanine ammonia-lyase+4.3.1.24
119596tryptophan deaminase+
119596urease+3.5.1.5
68382acid phosphatase+3.1.3.2

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119596-+-+++--+-++---+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119596+-++---+-++--------+-++--------+--++-------------+------+-+++--------------+--+++--------++++++---+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
52691Human urineBristolUnited KingdomGBREurope
119596Human, UrineBristolUnited KingdomGBREurope1984

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Urine

Safety information

risk assessment

  • @ref: 119596
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Proteus genomosp. 6 str. ATCC 51471GCA_003144505contigncbi1311821
66792Proteus genomosp. 6 str. ATCC 514711311821.3wgspatric1311821
66792Proteus genomosp. 6 ATCC 514712885172688draftimg1311821

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno99.985no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no91.361yes
125438spore-formingspore-formingAbility to form endo- or exosporesno90.731no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no79.407yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno98.947no
125438motile2+flagellatedAbility to perform flagellated movementyes72.009no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno98.3
125439BacteriaNetmotilityAbility to perform movementyes52.4
125439BacteriaNetgram_stainReaction to gram-stainingnegative98.2
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe97

External links

@ref: 52691

culture collection no.: CCUG 35381, ATCC 51471, CIP 106871

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
52691Curators of the CCUGhttps://www.ccug.se/strain?id=35381Culture Collection University of Gothenburg (CCUG) (CCUG 35381)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
119596Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106871Collection of Institut Pasteur (CIP 106871)
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG