Strain identifier

BacDive ID: 14833

Type strain: Yes

Species: Streptococcus infantarius subsp. coli

Strain history: CIP <- 2003, L. Mihaila Amrouche, Dieu Hosp., Paris, France: strain HDP 90246 <- A. Bonnet <- HD Collins

NCBI tax ID(s): 102684 (species)

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General

@ref: 16635

BacDive-ID: 14833

DSM-Number: 22957

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Streptococcus infantarius subsp. coli DSM 22957 is a microaerophile, mesophilic bacterium that was isolated from Human, Feces.

NCBI tax id

  • NCBI tax id: 102684
  • Matching level: species

strain history

@refhistory
16635<- CCUG <- R. R. Facklam, CDC <- A. Bouvet, Paris, France
67770UQM 3559 <-- NCDO 964.
120101CIP <- 2003, L. Mihaila Amrouche, Dieu Hosp., Paris, France: strain HDP 90246 <- A. Bonnet <- HD Collins

doi: 10.13145/bacdive14833.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus infantarius subsp. coli
  • full scientific name: Streptococcus infantarius subsp. coli Schlegel et al. 2003

@ref: 16635

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus infantarius subsp. coli

full scientific name: Streptococcus infantarius subsp. coli Schlegel et al. 2003 emend. Beck et al. 2008

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no96.107
69480100positive
120101nopositivecoccus-shaped

colony morphology

  • @ref: 120101

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16635COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16635TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
37409MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
120101CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
16635positivegrowth37mesophilic
37409positivegrowth37mesophilic
57892positivegrowth37mesophilic
58178positivegrowth37mesophilic
67770positivegrowth28mesophilic
120101positivegrowth25-45
120101nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
16635microaerophile
57892microaerophile
58178microaerophile
120101facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.996

halophily

  • @ref: 120101
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371raffinose+builds acid from16634
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
120101esculin+hydrolysis4853
120101hippurate+hydrolysis606565
120101nitrate-reduction17632
120101nitrite-reduction16301
68381arginine-hydrolysis29016
68381D-ribose-builds acid from16988
68381D-mannitol-builds acid from16899
68381sorbitol-builds acid from30911
68381lactose+builds acid from17716
68381trehalose-builds acid from27082
68381raffinose-builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate-hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan-builds acid from27941
68381maltose+builds acid from17306
68381melibiose-builds acid from28053
68381melezitose-builds acid from6731
68381methyl beta-D-glucopyranoside+builds acid from320055
68381D-tagatose-builds acid from16443
68381urea-hydrolysis16199

antibiotic resistance

  • @ref: 120101
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin+
12010115688acetoin+

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
120101oxidase-
120101beta-galactosidase+3.2.1.23
120101alcohol dehydrogenase-1.1.1.1
120101catalase-1.11.1.6
120101gamma-glutamyltransferase+2.3.2.2
120101lysine decarboxylase-4.1.1.18
120101ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57892C14:03.314
    57892C16:021.416
    57892C18:08.818
    57892C16:1 ω5c1.615.908
    57892C16:1 ω7c5.115.819
    57892C16:1 ω9c7.715.774
    57892C18:1 ω7c /12t/9t21.917.824
    57892C18:1 ω9c13.817.769
    57892C18:2 ω6,9c/C18:0 ANTE8.617.724
    57892C19:1 ISO I1.518.473
    57892Unidentified1.518.193
    57892Unidentified519.921
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120101--++-+------+--++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120101---------++++--------+++++/-+/-+/-+++/---+/-++/---+---------+/-

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
16635-+--+----+--+---++-------+--+---

Isolation, sampling and environmental information

isolation

  • @ref: 120101
  • sample type: Human, Feces

taxonmaps

  • @ref: 69479
  • File name: preview.99_1029.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_100;97_690;98_805;99_1029&stattab=map
  • Last taxonomy: Streptococcus
  • 16S sequence: LC269365
  • Sequence Identity:
  • Total samples: 36809
  • soil counts: 419
  • aquatic counts: 1799
  • animal counts: 33925
  • plant counts: 666

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
166352Risk group (German classification)
1201012Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
16635Streptococcus lutetiensis strain HDP90246 16S ribosomal RNA gene, partial sequenceAF4297631473ena150055
67770Streptococcus sp. JCM 7889 gene for 16S ribosomal RNA, partial sequenceLC2693651492ena1987054

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus lutetiensis strain FDAARGOS_1018150055.112completepatric150055
66792Streptococcus infantarius DSM 229572928254298draftimg102684

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.082no
gram-positiveyes93.891no
anaerobicno84.599yes
aerobicno98.486yes
halophileyes75.037no
spore-formingno94.244no
thermophileno99.619yes
glucose-utilyes89.09no
flagellatedno96.68no
glucose-fermentyes80.315no

External links

@ref: 16635

culture collection no.: DSM 22957, CCUG 47831, CCUG 48464, NCIMB 700964 (formerly NCDO 964), NCIMB 700964, JCM 7889, CIP 108103, HDP 90246, NCDO 964, UQM 3559

straininfo link

  • @ref: 83949
  • straininfo: 61185

Reference

@idauthorscataloguedoi/urltitle
16635Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22957)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22957
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37409Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5689
57892Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 47831)https://www.ccug.se/strain?id=47831
58178Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 48464)https://www.ccug.se/strain?id=48464
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83949Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID61185.1StrainInfo: A central database for resolving microbial strain identifiers
120101Curators of the CIPCollection of Institut Pasteur (CIP 108103)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108103