Strain identifier

BacDive ID: 14832

Type strain: Yes

Species: Streptococcus infantarius

Strain history: CIP <- 1988, NCFB, Streptococcus equinus <- Nat. Inst. Res. Dairying, Shinfield, UK: strain BR6, Streptococcus bovis

NCBI tax ID(s): 471872 (strain), 102684 (species)

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General

@ref: 16558

BacDive-ID: 14832

DSM-Number: 22960

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Streptococcus infantarius NCIMB 700599 is a microaerophile, mesophilic bacterium that was isolated from faeces of a human infant.

NCBI tax id

NCBI tax idMatching level
471872strain
102684species

strain history

@refhistory
16558<- CCUG <- P. Green, NCIMB <- NCFB, Reading, UK <- M. E. Sharpe, NIRD
120102CIP <- 1988, NCFB, Streptococcus equinus <- Nat. Inst. Res. Dairying, Shinfield, UK: strain BR6, Streptococcus bovis

doi: 10.13145/bacdive14832.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus infantarius
  • full scientific name: Streptococcus infantarius Schlegel et al. 2000

  • synonyms

    • @ref: 20215
    • synonym: Streptococcus infantarius

@ref: 16558

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus infantarius subsp. infantarius

full scientific name: Streptococcus infantarius subsp. infantarius (Schlegel et al. 2000) Schlegel et al. 2003

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no96.117
69480100positive
120102nopositivecoccus-shaped

colony morphology

  • @ref: 120102

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16558COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16558TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
34229MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
120102CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
16558positivegrowth37mesophilic
34229positivegrowth37mesophilic
56045positivegrowth37mesophilic
120102positivegrowth25-45
120102nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
16558microaerophile
56045microaerophile
120102anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.996

halophily

  • @ref: 120102
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin+builds acid from17814
68371esculin-builds acid from4853
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
120102esculin-hydrolysis4853
120102hippurate+hydrolysis606565
120102nitrate-reduction17632
120102nitrite-reduction16301
68381arginine-hydrolysis29016
68381D-ribose-builds acid from16988
68381D-mannitol-builds acid from16899
68381sorbitol-builds acid from30911
68381lactose+builds acid from17716
68381trehalose-builds acid from27082
68381raffinose+builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate-hydrolysis606565
68381glycogen+builds acid from28087
68381pullulan+builds acid from27941
68381maltose+builds acid from17306
68381melezitose-builds acid from6731
68381methyl beta-D-glucopyranoside-builds acid from320055
68381D-tagatose-builds acid from16443
68381urea-hydrolysis16199

antibiotic resistance

  • @ref: 120102
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin+
12010215688acetoin+

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
120102oxidase-
120102beta-galactosidase+3.2.1.23
120102alcohol dehydrogenase-1.1.1.1
120102catalase-1.11.1.6
120102gamma-glutamyltransferase+2.3.2.2
120102lysine decarboxylase-4.1.1.18
120102ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120102-+-+-+-----++-------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120102---------++++--------+-+/--+-++++---+++-----------+/-

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
16558----+----+-++---++-----+++------
16558----+----+-++---+++----++++-----

Isolation, sampling and environmental information

isolation

@refsample typeisolation date
16558faeces of a human infant
56045Human feces,infant
120102Human, Feces1949

isolation source categories

Cat1Cat2Cat3
#Host#Human#Child
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1029.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_100;97_690;98_805;99_1029&stattab=map
  • Last taxonomy: Streptococcus
  • 16S sequence: AF429762
  • Sequence Identity:
  • Total samples: 36809
  • soil counts: 419
  • aquatic counts: 1799
  • animal counts: 33925
  • plant counts: 666

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
165582Risk group (German classification)
1201022Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus infantarius subsp. infantarius strain ATCC BAA102 16S-23S ribosomal RNA intergenic spacer, partial sequenceDQ204499273ena471872
20218Streptococcus infantarius subsp. infantarius ATCC BAA-102 16S-23S ribosomal RNA intergenic spacer, partial sequenceEU860359273ena471872
20218Streptococcus infantarius strain ATCC BAA-102 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceJN181384538ena102684
16558Streptococcus infantarius subsp. infantarius ATCC BAA-102 strain HDP90056 16S ribosomal RNA gene, partial sequenceAF4297621386ena150054

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus infantarius strain FDAARGOS_1019102684.41completepatric102684
66792Streptococcus infantarius subsp. infantarius ATCC BAA-102471872.6wgspatric471872

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno95.043no
flagellatedno95.973no
gram-positiveyes93.501no
anaerobicno88.071no
aerobicno98.267yes
halophileyes81.602no
spore-formingno93.807no
thermophileno99.548no
glucose-utilyes89.344no
glucose-fermentyes76.985no

External links

@ref: 16558

culture collection no.: NCIMB 700599, BR 6, DSM 22960, ATCC BAA 102, CCUG 43820, CIP 103233, HDP 90056, NCDO 599, NCFB 599, NCIMB 700599 (formerly NCDO 599)

straininfo link

  • @ref: 83948
  • straininfo: 9430

literature

  • topic: Phylogeny
  • Pubmed-ID: 10939646
  • title: Streptococcus infantarius sp. nov., Streptococcus infantarius subsp. infantarius subsp. nov. and Streptococcus infantarius subsp. coli subsp. nov., isolated from humans and food.
  • authors: Schlegel L, Grimont F, Collins MD, Regnault B, Grimont PA, Bouvet A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-50-4-1425
  • year: 2000
  • mesh: Animals, Cheese/microbiology, DNA, Bacterial/genetics, Esculin/metabolism, *Food Microbiology, Humans, Mannitol/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Peas/microbiology, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/analysis, Ribotyping, Streptococcus/*classification/genetics/metabolism, Streptococcus bovis/genetics/metabolism, Streptococcus equi/genetics/metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16558Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22960)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22960
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34229Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15008
56045Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 43820)https://www.ccug.se/strain?id=43820
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83948Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID9430.1StrainInfo: A central database for resolving microbial strain identifiers
120102Curators of the CIPCollection of Institut Pasteur (CIP 103233)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103233