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Strain identifier

BacDive ID: 14831

Type strain: Yes

Species: Streptococcus pseudopneumoniae

Strain Designation: O 108

Strain history: <- CCUG <- R. R. Facklam <- J. C. Arbique <- Queen Elizabeth II HSC, Halifax, Canada

NCBI tax ID(s): 889205 (strain), 257758 (species)

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General

@ref: 7651

BacDive-ID: 14831

DSM-Number: 18670

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Streptococcus pseudopneumoniae O 108 is a microaerophile, mesophilic bacterium that was isolated from human sputum, pneumonia.

NCBI tax id

NCBI tax idMatching level
257758species
889205strain

strain history: <- CCUG <- R. R. Facklam <- J. C. Arbique <- Queen Elizabeth II HSC, Halifax, Canada

doi: 10.13145/bacdive14831.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus pseudopneumoniae
  • full scientific name: Streptococcus pseudopneumoniae Arbique et al. 2005

@ref: 7651

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus pseudopneumoniae

full scientific name: Streptococcus pseudopneumoniae Arbique et al. 2005

strain designation: O 108

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 97.576

colony morphology

@reftype of hemolysisincubation periodhemolysis ability
7651alpha1-2 days
68370beta-

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7651TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
7651COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
32745MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)

culture temp

@refgrowthtypetemperaturerange
7651positivegrowth37mesophilic
32745positivegrowth37mesophilic
58566positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
7651microaerophile
58566microaerophile

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 95.34

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 85.57

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838116199urea-hydrolysis
6838116443D-tagatose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
683816731melezitose-builds acid from
6838128053melibiose-builds acid from
6838128087glycogen-builds acid from
6838140585alpha-cyclodextrin-builds acid from
6838118333D-arabitol-builds acid from
6838130849L-arabinose-builds acid from
6838116634raffinose-builds acid from
6838127082trehalose-builds acid from
6838117716lactose+builds acid from
6838130911sorbitol-builds acid from
6838116899D-mannitol-builds acid from
6838116988D-ribose-builds acid from
6838129016arginine-hydrolysis
6838027897tryptophan-energy source
6838017632nitrate-reduction
6838029985L-glutamate-degradation
6838016634raffinose+fermentation
6838016024D-mannose+fermentation
6838029016arginine-hydrolysis
6838016199urea-hydrolysis
6837028087glycogen-builds acid from
6837016634raffinose-builds acid from
6837015443inulin-builds acid from
6837027082trehalose-builds acid from
6837017924D-sorbitol-builds acid from
6837016899D-mannitol-builds acid from
6837030849L-arabinose-builds acid from
6837016988D-ribose-builds acid from
6837029016arginine-hydrolysis
68370606565hippurate-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6838115688acetoinno
6838035581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin-
6838035581indole-

enzymes

@refvalueactivityec
7651catalase-1.11.1.6
7651cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate+
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68370arginine dihydrolase-3.5.3.6
68370leucine arylamidase+3.4.11.1
68370alkaline phosphatase+3.1.3.1
68370beta-glucuronidase-3.2.1.31
68370alpha-galactosidase-3.2.1.22
68370pyrrolidonyl arylamidase-3.4.19.3

API 20STR

@refVPHIPESCPYRAalpha GALbeta GURbeta GALPALLAPADHRIBARAMANSORLACTREINURAFAMDGLYGbeta HEM
7651--+/-----++-----------
7651+-----+++-----+---+--

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
7651---+++---+++----++--++-++---+

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
7651--+--+---+--+----+---++-++------
7651--+--+---+-------+---+----------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
7651human sputum, pneumoniaHalifaxCanadaCANNorth America
58566Human sputum,pneumoniaHalifaxCanadaCANNorth America2002

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Human
#Host Body Product#Fluids#Sputum

taxonmaps

  • @ref: 69479
  • File name: preview.99_4.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_4;97_4;98_4;99_4&stattab=map
  • Last taxonomy: Streptococcus
  • 16S sequence: EU156785
  • Sequence Identity:
  • Total samples: 59292
  • soil counts: 819
  • aquatic counts: 1515
  • animal counts: 56551
  • plant counts: 407

Safety information

risk assessment

  • @ref: 7651
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus pseudopneumoniae strain CCUG 49455 16S ribosomal RNA gene, partial sequenceEU1567851329ena889205
20218Streptococcus pseudopneumoniae strain CCUG 49455 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceHM241930459ena889205
7651Streptococcus pseudopneumoniae strain ATCC BAA-960 16S ribosomal RNA gene, partial sequenceAY6128441468ena889205

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus pseudopneumoniae ATCC BAA-960 = CCUG 49455 CCUG 49455GCA_002087075scaffoldncbi889205
66792Streptococcus pseudopneumoniae ATCC BAA-960 = CCUG 49455 ATCC BAA-960GCA_000257825contigncbi889205
66792Streptococcus pseudopneumoniae ATCC BAA-960 strain CCUG 49455889205.9wgspatric889205
66792Streptococcus pseudopneumoniae SK1069, CCUG 494552531839346draftimg889205

External links

@ref: 7651

culture collection no.: DSM 18670, ATCC BAA 960, CCUG 49455, CIP 108659

straininfo link

@refpassport
20218http://www.straininfo.net/strains/691096
20218http://www.straininfo.net/strains/378156
20218http://www.straininfo.net/strains/382786

literature

  • topic: Transcriptome
  • Pubmed-ID: 22607240
  • title: Comparative transcriptomic analysis of streptococcus pseudopneumoniae with viridans group streptococci.
  • authors: Park HK, Myung SC, Kim W
  • journal: BMC Microbiol
  • DOI: 10.1186/1471-2180-12-77
  • year: 2012
  • mesh: Cluster Analysis, Genetic Variation, Microarray Analysis, Streptococcus/*genetics, *Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7651Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18670)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18670
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
32745Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6312
58566Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 49455)https://www.ccug.se/strain?id=49455
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68370Automatically annotated from API 20STR
68380Automatically annotated from API rID32A
68381Automatically annotated from API rID32STR
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)