Archive BacDiveID:10.13145/bacdive148260.20250331.9.3

Strain identifier

BacDive ID: 148260

Type strain:

Species: Salmonella enterica

NCBI tax ID(s): 28901 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 52527

BacDive-ID: 148260

keywords: genome sequence, Bacteria, Gram-negative

description: Salmonella enterica CCUG 35119 is a Gram-negative bacterium of the family Enterobacteriaceae.

doi: 10.13145/bacdive148260.20250331.9.3

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Salmonella
species: Salmonella enterica
full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

@ref: 52527

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica

type strain: no

@ref	gram stain	confidence
125438	negative	100
125439	negative	90.8

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Salmonella enterica subsp. enterica NCTC12116	GCA_900456595	contig	ncbi	59201
66792	Salmonella enterica subsp. enterica strain NCTC12116	59201.944	wgs	patric	59201

@ref	model	trait	description	prediction	confidence	training_data
125438	gram-positive	gram-positive	Positive reaction to Gram-staining	no	100	no
125438	anaerobic	anaerobic	Ability to grow under anoxygenic conditions (including facultative anaerobes)	no	92.546	no
125438	spore-forming	spore-forming	Ability to form endo- or exospores	no	88.698	no
125438	aerobic	aerobic	Ability to grow under oxygenic conditions (including facultative aerobes)	no	74.159	no
125438	thermophile	thermophilic	Ability to grow at temperatures above or equal to 45°C	no	97	no
125438	motile2+	flagellated	Ability to perform flagellated movement	yes	75.028	no
125439	BacteriaNet	spore_formation	Ability to form endo- or exospores	no	83.1
125439	BacteriaNet	motility	Ability to perform movement	yes	65.7
125439	BacteriaNet	gram_stain	Reaction to gram-staining	negative	90.8
125439	BacteriaNet	oxygen_tolerance	Oxygenic conditions needed for growth	aerobe	71.7

@ref: 52527

culture collection no.: CCUG 35119, NCTC 12116

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
52527	Curators of the CCUG		https://www.ccug.se/strain?id=35119	Culture Collection University of Gothenburg (CCUG) (CCUG 35119)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann	Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets	10.1101/2024.08.12.607695
125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy	deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1	https://github.com/GenomeNet/deepG