Strain identifier
version 8.1 (current version)
General
@ref: 52527
BacDive-ID: 148260
keywords: genome sequence, Bacteria, motile
description: Salmonella enterica CCUG 35119 is a motile bacterium of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 28901
- Matching level: species
doi: 10.13145/bacdive148260.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Salmonella
- species: Salmonella enterica
- full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
synonyms
@ref synonym 20215 Bacillus typhi 20215 Bacillus typhimurium 20215 Bacillus enteritidis 20215 Bacillus choleraesuis 20215 Salmonella typhi 20215 Salmonella choleraesuis 20215 Salmonella paratyphi 20215 Salmonella typhimurium 20215 Salmonella enteritidis
@ref: 52527
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Salmonella
species: Salmonella enterica
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 92.119 | |
| 69480 | 99.99 | negative |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.882 |
| 69481 | no | 100 |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Salmonella enterica subsp. enterica NCTC12116 | GCA_900456595 | contig | ncbi | 59201 |
| 66792 | Salmonella enterica subsp. enterica strain NCTC12116 | 59201.944 | wgs | patric | 59201 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.502 | no |
| anaerobic | no | 88.626 | no |
| halophile | no | 93.058 | no |
| spore-forming | no | 93.618 | no |
| glucose-util | yes | 91.505 | no |
| thermophile | no | 98.958 | no |
| flagellated | yes | 52.037 | no |
| aerobic | yes | 71.355 | no |
| motile | yes | 89.831 | no |
| glucose-ferment | yes | 92.096 | no |
External links
@ref: 52527
culture collection no.: CCUG 35119, NCTC 12116
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 52527 | Curators of the CCUG | https://www.ccug.se/strain?id=35119 | Culture Collection University of Gothenburg (CCUG) (CCUG 35119) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |