Strain identifier
BacDive ID: 14821
Type strain:
Species: Streptococcus gallolyticus
Strain history: CIP <- 1998, ACM, Streptococcus gallolyticus <- R. Osawa
NCBI tax ID(s): 1258574 (strain), 315405 (species)
General
@ref: 6623
BacDive-ID: 14821
DSM-Number: 16831
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, human pathogen
description: Streptococcus gallolyticus DSM 16831 is a microaerophile, mesophilic human pathogen that was isolated from Koala, feces.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1258574 | strain |
315405 | species |
strain history
@ref | history |
---|---|
6623 | <- CIP <- ACM <- R. Osawa |
67770 | R. Osawa <-- ACM 3611. |
119521 | CIP <- 1998, ACM, Streptococcus gallolyticus <- R. Osawa |
doi: 10.13145/bacdive14821.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus gallolyticus
- full scientific name: Streptococcus gallolyticus Osawa et al. 1996
synonyms
- @ref: 20215
- synonym: Streptococcus caprinus
@ref: 6623
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus gallolyticus subsp. gallolyticus
full scientific name: Streptococcus gallolyticus subsp. gallolyticus (Osawa et al. 1996) Schlegel et al. 2003 emend. Beck et al. 2008
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 93 | ||
69480 | 100 | positive | ||
119521 | no | positive | coccus-shaped |
colony morphology
@ref | incubation period |
---|---|
6623 | 1-2 days |
119521 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6623 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
6623 | BHI MEDIUM (DSMZ Medium 215) | yes | https://mediadive.dsmz.de/medium/215 | Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water |
39864 | MEDIUM 29- Brain heart agar | yes | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |
119521 | CIP Medium 29 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6623 | positive | growth | 37 | mesophilic |
39864 | positive | growth | 37 | mesophilic |
52605 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
119521 | positive | growth | 10-45 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
6623 | microaerophile |
52605 | aerobe |
119521 | facultative anaerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.988 |
halophily
- @ref: 119521
- salt: NaCl
- growth: no
- tested relation: growth
- concentration: 6.5 %
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | + | builds acid from | 32528 |
68371 | gentiobiose | + | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | + | builds acid from | 28087 |
68371 | starch | + | builds acid from | 28017 |
68371 | raffinose | + | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | melibiose | + | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | + | builds acid from | 17057 |
68371 | salicin | + | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | + | builds acid from | 18305 |
68371 | amygdalin | + | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
119521 | esculin | + | hydrolysis | 4853 |
119521 | hippurate | - | hydrolysis | 606565 |
119521 | nitrate | - | reduction | 17632 |
119521 | nitrite | - | reduction | 16301 |
68381 | arginine | - | hydrolysis | 29016 |
68381 | D-ribose | - | builds acid from | 16988 |
68381 | D-mannitol | + | builds acid from | 16899 |
68381 | sorbitol | - | builds acid from | 30911 |
68381 | lactose | + | builds acid from | 17716 |
68381 | trehalose | + | builds acid from | 27082 |
68381 | raffinose | + | builds acid from | 16634 |
68381 | sucrose | + | builds acid from | 17992 |
68381 | L-arabinose | - | builds acid from | 30849 |
68381 | D-arabitol | - | builds acid from | 18333 |
68381 | alpha-cyclodextrin | - | builds acid from | 40585 |
68381 | hippurate | - | hydrolysis | 606565 |
68381 | glycogen | + | builds acid from | 28087 |
68381 | pullulan | + | builds acid from | 27941 |
68381 | maltose | + | builds acid from | 17306 |
68381 | melezitose | - | builds acid from | 6731 |
68381 | methyl beta-D-glucopyranoside | + | builds acid from | 320055 |
68381 | D-tagatose | - | builds acid from | 16443 |
68381 | urea | - | hydrolysis | 16199 |
metabolite tests
- @ref: 119521
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
68381 | urease | - | 3.5.1.5 |
68381 | glycyl tryptophan arylamidase | - | |
68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68381 | beta-galactosidase | - | 3.2.1.23 |
68381 | alkaline phosphatase | - | 3.1.3.1 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | + | 3.2.1.21 |
68381 | arginine dihydrolase | - | 3.5.3.6 |
119521 | oxidase | - | |
119521 | beta-galactosidase | - | 3.2.1.23 |
119521 | alcohol dehydrogenase | - | 1.1.1.1 |
119521 | catalase | - | 1.11.1.6 |
119521 | gamma-glutamyltransferase | - | 2.3.2.2 |
119521 | lysine decarboxylase | - | 4.1.1.18 |
119521 | ornithine decarboxylase | - | 4.1.1.17 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119521 | - | - | + | + | - | + | - | - | - | - | + | + | + | - | - | + | + | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119521 | +/- | - | - | - | +/- | - | - | - | - | + | + | + | + | - | - | - | - | + | +/- | - | - | + | + | + | + | + | + | + | + | + | + | + | - | - | + | + | + | - | + | + | - | - | - | - | - | - | +/- | - | - |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6623 | - | + | - | - | + | - | - | + | - | + | + | + | + | - | - | - | + | + | - | - | - | - | - | + | + | + | - | - | + | - | - | - |
6623 | - | + | - | - | + | - | - | + | - | + | + | + | + | - | - | - | + | + | - | - | - | - | - | + | + | + | + | - | + | - | - | - |
6623 | - | + | - | - | +/- | - | - | + | - | + | + | + | + | - | - | - | - | +/- | - | - | - | - | - | + | + | + | - | - | + | - | +/- | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
6623 | Koala, feces | Brisbane | Australia | AUS | Australia and Oceania | |
52605 | Koala feces | |||||
67770 | Koala feces | |||||
119521 | Koala, feces | Brisbane | Australia | AUS | Australia and Oceania | 1990 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
@ref | pathogenicity human | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|---|
6623 | yes | yes | 2 | Risk group (German classification) |
119521 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptococcus gallolyticus subsp. gallolyticus strain CCUG 35224 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence | DQ204509 | 364 | ena | 53354 |
20218 | Streptococcus gallolyticus subsp. gallolyticus strain CCUG 35224 16S-23S ribosomal RNA intergenic spacer, partial sequence | EU860360 | 274 | ena | 53354 |
6623 | Streptococcus gallolyticus subsp. gallolyticus strain ATCC 43143 16S ribosomal RNA gene, partial sequence | AF104114 | 1541 | ena | 981539 |
67770 | Streptococcus gallolyticus subsp. gallolyticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 10005 | LC145555 | 1480 | ena | 53354 |
67770 | S.gallolyticus 16S ribsomal RNA | X94337 | 1501 | ena | 53354 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptococcus gallolyticus NCTC13773 | GCA_900475715 | complete | ncbi | 315405 |
66792 | Streptococcus gallolyticus subsp. gallolyticus DSM 16831 | GCA_002000985 | complete | ncbi | 1258574 |
66792 | Streptococcus gallolyticus strain NCTC13773 | 315405.22 | complete | patric | 315405 |
66792 | Streptococcus gallolyticus subsp. gallolyticus DSM 16831 strain DSM 16831 | 1258574.3 | complete | patric | 1258574 |
66792 | Streptococcus gallolyticus gallolyticus DSM 16831 | 2917282946 | complete | img | 1258574 |
GC content
- @ref: 67770
- GC-content: 38.1
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 94.447 | no |
gram-positive | yes | 95.356 | no |
anaerobic | no | 87.524 | no |
aerobic | no | 97.289 | no |
halophile | yes | 65.792 | no |
spore-forming | no | 91.504 | no |
glucose-util | yes | 90.811 | no |
thermophile | no | 99.577 | yes |
motile | no | 92.823 | no |
glucose-ferment | yes | 78.992 | no |
External links
@ref: 6623
culture collection no.: DSM 16831, ACM 3611, CCUG 35224, CIP 105428, JCM 10005, LMG 16802, CIP 105425, NCTC 13773
straininfo link
- @ref: 83938
- straininfo: 8029
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 12054261 | Isolation from a shea cake digester of a tannin-degrading Streptococcus gallolyticus strain that decarboxylates protocatechuic and hydroxycinnamic acids, and emendation of the species. | Chamkha M, Patel BKC, Traore A, Garcia JL, Labat M | Int J Syst Evol Microbiol | 10.1099/00207713-52-3-939 | 2002 | Anaerobiosis, Bacterial Typing Techniques, Biodegradation, Environmental, Bioreactors/*microbiology, Coumaric Acids/metabolism, DNA, Ribosomal/analysis, Decarboxylation, Hydroxybenzoates/metabolism, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptococcus/*classification/genetics/*isolation & purification/metabolism, Tannins/*metabolism, Trees/*metabolism/microbiology | Metabolism |
Pathogenicity | 19925668 | Investigation into the controversial association of Streptococcus gallolyticus with colorectal cancer and adenoma. | Abdulamir AS, Hafidh RR, Mahdi LK, Al-jeboori T, Abubaker F | BMC Cancer | 10.1186/1471-2407-9-403 | 2009 | Adenocarcinoma/blood/*microbiology, Adenoma/blood/*microbiology, Adult, Aged, Antibodies, Bacterial/blood, Colorectal Neoplasms/blood/*microbiology, Enzyme-Linked Immunosorbent Assay, Female, Humans, Immunoglobulin G/blood, In Situ Hybridization, Interleukin-8/biosynthesis, Male, Middle Aged, NF-kappa B/biosynthesis, RNA, Messenger/analysis, Seroepidemiologic Studies, Streptococcal Infections/*epidemiology | |
Genetics | 28428288 | Complete Genome Sequence of the Streptococcus gallolyticus subsp. gallolyticus Strain DSM 16831. | Grimm I, Dumke J, Vollmer T, Hinse D, Ruckert C, Kalinowski J, Knabbe C, Dreier J | Genome Announc | 10.1128/genomeA.00108-17 | 2017 | ||
Transcriptome | 28672015 | Transcriptome analysis of Streptococcus gallolyticus subsp. gallolyticus in interaction with THP-1 macrophage-like cells. | Grimm I, Garben N, Dreier J, Knabbe C, Vollmer T | PLoS One | 10.1371/journal.pone.0180044 | 2017 | Cell Line, Gene Expression Profiling, *Genes, Bacterial, Humans, Oligonucleotide Array Sequence Analysis, Phagocytosis, Real-Time Polymerase Chain Reaction, Streptococcus gallolyticus/*genetics, *Transcriptome | Pathogenicity |
Pathogenicity | 29078765 | Strain-dependent interactions of Streptococcus gallolyticus subsp. gallolyticus with human blood cells. | Grimm I, Weinstock M, Birschmann I, Dreier J, Knabbe C, Vollmer T | BMC Microbiol | 10.1186/s12866-017-1116-1 | 2017 | Cell Line, Tumor, Gene Expression Regulation/immunology, Host-Pathogen Interactions/immunology, Humans, Interleukins/blood/genetics/immunology, Macrophages/immunology, Platelet Aggregation/immunology, Species Specificity, Streptococcal Infections/blood/*immunology/*microbiology, Streptococcus gallolyticus subspecies gallolyticus/growth & development/immunology/pathogenicity/*physiology, THP-1 Cells | Phylogeny |
Transcriptome | 29373594 | Biofilm formation and transcriptome analysis of Streptococcus gallolyticus subsp. gallolyticus in response to lysozyme. | Grimm I, Dumke J, Dreier J, Knabbe C, Vollmer T | PLoS One | 10.1371/journal.pone.0191705 | 2018 | *Biofilms, Muramidase/*metabolism, Streptococcus gallolyticus subspecies gallolyticus/genetics/*metabolism, *Transcriptome | Metabolism |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
6623 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16831) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16831 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
39864 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17447 | ||||
52605 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 35224) | https://www.ccug.se/strain?id=35224 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68381 | Automatically annotated from API rID32STR | |||||
68382 | Automatically annotated from API zym | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
83938 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID8029.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119521 | Curators of the CIP | Collection of Institut Pasteur (CIP 105428) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105428 |