Strain identifier

BacDive ID: 148146

Type strain: No

Species: Vibrio fluvialis

NCBI tax ID(s): 676 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 52394

BacDive-ID: 148146

keywords: Bacteria

description: Vibrio fluvialis CCUG 34900 is a bacterium that was isolated from Human feces.

NCBI tax id

  • NCBI tax id: 676
  • Matching level: species

doi: 10.13145/bacdive148146.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio fluvialis
  • full scientific name: Vibrio fluvialis Lee et al. 1981
  • synonyms

    • @ref: 20215
    • synonym: Allomonas enterica

@ref: 52394

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio fluvialis

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837418257ornithine-degradation
6837429016arginine+hydrolysis
6837425094lysine-degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid+builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol+builds acid from
6837417306maltose+builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan+energy source
6837417634D-glucose+builds acid from
6837417992sucrose+builds acid from
6837430849L-arabinose+builds acid from
6837418333D-arabitol+builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from

metabolite production

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase-
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase+3.5.3.6
68374ornithine decarboxylase-4.1.1.17

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    52394C12:04.712
    52394C14:05.214
    52394C15:01.415
    52394C16:011.416
    52394C17:01.317
    52394C12:0 3OH2.613.455
    52394C13:0 iso1.812.612
    52394C14:0 3OH/C16:1 ISO I3.315.485
    52394C14:0 ISO0.613.618
    52394C14:0 ISO 3OH115.117
    52394C15:0 ISO1.214.621
    52394C15:0 ISO 3OH0.816.135
    52394C15:1 ω6c0.714.856
    52394C15:1 ω8c0.814.792
    52394C16:0 iso4.115.626
    52394C16:1 ω7c20.915.819
    52394C16:1 ω7c/C15:0 ISO 2OH14.315.85
    52394C17:0 iso1.716.629
    52394C17:1 ω6c1.316.862
    52394C17:1 ω8c2.416.792
    52394C18:0 ISO1.617.632
    52394C18:1 ω7c /12t/9t13.117.824
    52394C18:2 ω6,9c/C18:0 ANTE1.517.724
    52394Unidentified1.113.858
    52394unknown 12.4861.112.486
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
52394-+---+--++++----+-+++++--+------

Isolation, sampling and environmental information

isolation

  • @ref: 52394
  • sample type: Human feces
  • geographic location: Hamburg
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

External links

@ref: 52394

culture collection no.: CCUG 34900

straininfo link

  • @ref: 102757
  • straininfo: 58251

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
52394Curators of the CCUGhttps://www.ccug.se/strain?id=34900Culture Collection University of Gothenburg (CCUG) (CCUG 34900)
68374Automatically annotated from API ID32E
102757Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID58251.1