Strain identifier

BacDive ID: 148145

Type strain: No

Species: Vibrio mimicus

NCBI tax ID(s): 674 (species)

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General

@ref: 52393

BacDive-ID: 148145

keywords: Bacteria

description: Vibrio mimicus CCUG 34899 is a bacterium that was isolated from Water,Elbe river.

NCBI tax id

  • NCBI tax id: 674
  • Matching level: species

doi: 10.13145/bacdive148145.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio mimicus
  • full scientific name: Vibrio mimicus Davis et al. 1982

@ref: 52393

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio mimicus

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837430911sorbitol-builds acid from
6837417268myo-inositol-builds acid from
6837462345L-rhamnose-builds acid from
6837427082trehalose-builds acid from
6837418333D-arabitol-builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose-builds acid from
6837415792malonate-assimilation
6837418394palatinose-builds acid from
6837415963ribitol-builds acid from
6837417306maltose-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837418024D-galacturonic acid-builds acid from
6837418403L-arabitol-builds acid from
6837416199urea-hydrolysis
6837425094lysine-degradation
6837429016arginine-hydrolysis
6837418257ornithine+degradation
6837417057cellobiose-builds acid from
6837417634D-glucose-builds acid from
6837427897tryptophan+energy source
6837416899D-mannitol-builds acid from
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleyes
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6837435581indole+
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68374alpha-maltosidase-
68374alpha-galactosidase-3.2.1.22
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374L-aspartate arylamidase-3.4.11.21
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase+
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase+4.1.1.17
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    52393C14:04.714
    52393C15:00.515
    52393C16:012.516
    52393C17:00.517
    52393C18:00.418
    52393C10:0 3OH0.511.423
    52393C11:0 3OH0.312.441
    52393C12:0 3OH9.413.455
    52393C12:1 3OH0.513.289
    52393C13:0 3OH/C15:1 i I/H0.414.469
    52393C13:0 ISO 2OH0.413.814
    52393C14:0 3OH/C16:1 ISO I6.215.485
    52393C14:0 ISO 3OH0.615.117
    52393C16:0 anteiso0.215.717
    52393C16:0 iso0.515.626
    52393C16:1 ω7c34.215.819
    52393C16:1 ω7c alcohol0.415.386
    52393C16:1 ω7c/C15:0 ISO 2OH9.415.85
    52393C16:1 ω9c115.774
    52393C17:1 ω8c116.792
    52393C18:1 ω7c /12t/9t11.717.824
    52393C18:1 ω9c0.617.769
    52393C18:2 ω6,9c/C18:0 ANTE1.117.724
    52393Unidentified0.310.916
    52393Unidentified0.911.95
    52393Unidentified0.313.861
    52393Unidentified0.415.278
    52393unknown 12.4861.112.486
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
52393+-+++---+-+++-------+

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
52393+------++-------+-+-------------

Isolation, sampling and environmental information

isolation

  • @ref: 52393
  • sample type: Water,Elbe river
  • geographic location: Hamburg
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

External links

@ref: 52393

culture collection no.: CCUG 34899

straininfo link

  • @ref: 102756
  • straininfo: 58279

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
52393Curators of the CCUGhttps://www.ccug.se/strain?id=34899Culture Collection University of Gothenburg (CCUG) (CCUG 34899)
68368Automatically annotated from API 20E
68374Automatically annotated from API ID32E
102756Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID58279.1