Strain identifier

BacDive ID: 14813

Type strain: Yes

Species: Streptococcus gallolyticus subsp. pasteurianus

Strain history: CIP <- 2001, C. Poyart, Lab. mixte Pasteur Necker, Paris, France: strain NEM 1202

NCBI tax ID(s): 197614 (species)

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General

@ref: 5866

BacDive-ID: 14813

DSM-Number: 15351

keywords: 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, ovoid-shaped, human pathogen

description: Streptococcus gallolyticus subsp. pasteurianus DSM 15351 is a microaerophile, mesophilic, Gram-positive human pathogen that was isolated from human cerebrospinal fluid.

NCBI tax id

  • NCBI tax id: 197614
  • Matching level: species

strain history

@refhistory
5866<- CIP <- C. Poyart; NEM 1202
328572001, C. Poyart, Lab. mixte Pasteur Necker, Paris, France: strain NEM 1202
67770CIP 107122 <-- C. Poyart NEM 1202.
119520CIP <- 2001, C. Poyart, Lab. mixte Pasteur Necker, Paris, France: strain NEM 1202

doi: 10.13145/bacdive14813.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus gallolyticus subsp. pasteurianus
  • full scientific name: Streptococcus gallolyticus subsp. pasteurianus (Poyart et al. 2002) Schlegel et al. 2003

  • synonyms

    • @ref: 20215
    • synonym: Streptococcus pasteurianus

@ref: 5866

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus gallolyticus subsp. pasteurianus

full scientific name: Streptococcus gallolyticus subsp. pasteurianus (Poyart et al. 2002) Schlegel et al. 2003 emend. Beck et al. 2008

type strain: yes

Morphology

cell morphology

  • @ref: 119520
  • gram stain: positive
  • cell shape: ovoid-shaped
  • motility: no

colony morphology

@refincubation period
58661-2 days
119520

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5866COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
5866TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
32857MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
119520CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperaturerange
5866positivegrowth37mesophilic
32857positivegrowth37mesophilic
57081positivegrowth37mesophilic
67770positivegrowth37mesophilic
119520positivegrowth25-41
119520nogrowth10psychrophilic
119520nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
5866microaerophile
57081microaerophile
119520facultative anaerobe

halophily

  • @ref: 119520
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
119520esculin+hydrolysis4853
119520hippurate-hydrolysis606565
119520nitrate-reduction17632
119520nitrite-reduction16301
68381arginine-hydrolysis29016
68381D-ribose-builds acid from16988
68381D-mannitol-builds acid from16899
68381sorbitol-builds acid from30911
68381lactose+builds acid from17716
68381trehalose+builds acid from27082
68381raffinose+builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate-hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan-builds acid from27941
68381maltose+builds acid from17306
68381melibiose-builds acid from28053
68381melezitose-builds acid from6731
68381methyl beta-D-glucopyranoside+builds acid from320055
68381urea-hydrolysis16199

antibiotic resistance

  • @ref: 119520
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin+
11952015688acetoin+

enzymes

@refvalueactivityec
5866catalase-1.11.1.6
5866cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
119520oxidase-
119520beta-galactosidase+3.2.1.23
119520alcohol dehydrogenase-1.1.1.1
119520catalase-1.11.1.6
119520gamma-glutamyltransferase-2.3.2.2
119520lysine decarboxylase-4.1.1.18
119520ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57081C12:00.612
    57081C14:06.814
    57081C16:035.516
    57081C18:09.718
    57081C16:1 ω5c115.908
    57081C16:1 ω7c2.515.819
    57081C16:1 ω9c4.315.774
    57081C18:1 ω7c /12t/9t14.317.824
    57081C18:1 ω9c14.317.769
    57081C18:2 ω6,9c/C18:0 ANTE8.617.724
    57081C20:1 ω9c1.119.77
    57081C20:2 ω6,9c0.519.735
    57081Unidentified118.192
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119520-----+-+----++-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119520---------++++-------++++++++++++-+/-+++/--++-+/-------+/-

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
5866-+--+----++++---+++------+--+-+/--
5866-++-+----++++---+++------+--++/-+-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
5866human cerebrospinal fluidFranceFRAEurope
57081Human cerebrospinal fluid,infant
67770Human cerebrospinal fluid
119520Human, Cerebrospinal fluid, infant

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Cerebrospinal fluid
#Infection#Patient

taxonmaps

  • @ref: 69479
  • File name: preview.99_1057.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_100;97_690;98_805;99_1057&stattab=map
  • Last taxonomy: Streptococcus
  • 16S sequence: LC145571
  • Sequence Identity:
  • Total samples: 43761
  • soil counts: 927
  • aquatic counts: 2522
  • animal counts: 39763
  • plant counts: 549

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
5866yesyes2Risk group (German classification)
1195202Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus pasteurianus strain DSM 15351 16S ribosomal RNA gene, partial sequenceDQ118673462ena197614
20218Streptococcus pasteurianus strain CIP 107122 16S ribosomal RNA gene, partial sequenceDQ2325281470ena197614
5866Streptococcus pasteuri partial 16S rRNA gene, strain NEM1202, CIP 105070AJ2972161466ena142596
67770Streptococcus pasteurianus gene for 16S ribosomal RNA, partial sequence, strain: JCM 12261LC1455711455ena197614

External links

@ref: 5866

culture collection no.: DSM 15351, CIP 107122, CCUG 46150, NEM 1202, JCM 12261, KCTC 3878, LMG 22270

straininfo link

  • @ref: 83930
  • straininfo: 100969

literature

  • topic: Phylogeny
  • Pubmed-ID: 12148636
  • title: Taxonomic dissection of the Streptococcus bovis group by analysis of manganese-dependent superoxide dismutase gene (sodA) sequences: reclassification of 'Streptococcus infantarius subsp. coli' as Streptococcus lutetiensis sp. nov. and of Streptococcus bovis biotype 11.2 as Streptococcus pasteurianus sp. nov.
  • authors: Poyart C, Quesne G, Trieu-Cuot P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-4-1247
  • year: 2002
  • mesh: Animals, Cattle, DNA, Ribosomal/analysis, Humans, Infant, Newborn, Manganese/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptococcal Infections/microbiology/veterinary, Streptococcus/*classification/enzymology/genetics, Streptococcus bovis/*classification/enzymology/genetics, Superoxide Dismutase/genetics
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5866Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15351)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15351
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
32857Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4523
57081Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 46150)https://www.ccug.se/strain?id=46150
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83930Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100969.1StrainInfo: A central database for resolving microbial strain identifiers
119520Curators of the CIPCollection of Institut Pasteur (CIP 107122)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107122