Strain identifier

BacDive ID: 14813

Type strain: Yes

Species: Streptococcus gallolyticus subsp. pasteurianus

Strain history: CIP <- 2001, C. Poyart, Lab. mixte Pasteur Necker, Paris, France: strain NEM 1202

NCBI tax ID(s): 197614 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.2 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9.2 (current version)

General

@ref: 5866

BacDive-ID: 14813

DSM-Number: 15351

keywords: 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, ovoid-shaped, human pathogen

description: Streptococcus gallolyticus subsp. pasteurianus DSM 15351 is a microaerophile, mesophilic, Gram-positive human pathogen that was isolated from human cerebrospinal fluid.

NCBI tax id

  • NCBI tax id: 197614
  • Matching level: species

strain history

@refhistory
5866<- CIP <- C. Poyart; NEM 1202
328572001, C. Poyart, Lab. mixte Pasteur Necker, Paris, France: strain NEM 1202
67770CIP 107122 <-- C. Poyart NEM 1202.
119520CIP <- 2001, C. Poyart, Lab. mixte Pasteur Necker, Paris, France: strain NEM 1202

doi: 10.13145/bacdive14813.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus gallolyticus subsp. pasteurianus
  • full scientific name: Streptococcus gallolyticus subsp. pasteurianus (Poyart et al. 2002) Schlegel et al. 2003

  • synonyms

    • @ref: 20215
    • synonym: Streptococcus pasteurianus

@ref: 5866

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus gallolyticus subsp. pasteurianus

full scientific name: Streptococcus gallolyticus subsp. pasteurianus (Poyart et al. 2002) Schlegel et al. 2003 emend. Beck et al. 2008

type strain: yes

Morphology

cell morphology

  • @ref: 119520
  • gram stain: positive
  • cell shape: ovoid-shaped
  • motility: no

colony morphology

@refincubation period
58661-2 days
119520

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5866COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
5866TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
32857MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
119520CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperature
5866positivegrowth37
32857positivegrowth37
57081positivegrowth37
67770positivegrowth37
119520positivegrowth25-41
119520nogrowth10
119520nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
5866microaerophile
57081microaerophile
119520facultative anaerobe

halophily

  • @ref: 119520
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838116199urea-hydrolysis
68381320055methyl beta-D-glucopyranoside+builds acid from
683816731melezitose-builds acid from
6838128053melibiose-builds acid from
6838117306maltose+builds acid from
6838127941pullulan-builds acid from
6838128087glycogen-builds acid from
68381606565hippurate-hydrolysis
6838140585alpha-cyclodextrin-builds acid from
6838118333D-arabitol-builds acid from
6838130849L-arabinose-builds acid from
6838117992sucrose+builds acid from
6838127082trehalose+builds acid from
6838116634raffinose+builds acid from
6838117716lactose+builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
1195204853esculin+hydrolysis
119520606565hippurate-hydrolysis
11952017632nitrate-reduction
11952016301nitrite-reduction
6837118305arbutin+builds acid from
6837127613amygdalin+builds acid from
68371320061methyl alpha-D-glucopyranoside+builds acid from
6837112936D-galactose+builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128017starch+builds acid from
6837116634raffinose+builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose+builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837159640N-acetylglucosamine+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

antibiotic resistance

  • @ref: 119520
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin+
11952015688acetoin+

enzymes

@refvalueactivityec
5866catalase-1.11.1.6
5866cytochrome-c oxidase-1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase+3.4.11.3
68382valine arylamidase-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
68381urease-3.5.1.5
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase+3.2.1.23
68381alkaline phosphatase-3.1.3.1
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alpha-galactosidase+3.2.1.22
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
119520oxidase-
119520beta-galactosidase+3.2.1.23
119520alcohol dehydrogenase-1.1.1.1
119520catalase-1.11.1.6
119520gamma-glutamyltransferase-2.3.2.2
119520lysine decarboxylase-4.1.1.18
119520ornithine decarboxylase-4.1.1.17
68381glycyl tryptophan arylamidase-
68381beta-glucuronidase-3.2.1.31
68382alpha-mannosidase-3.2.1.24
68382alpha-galactosidase+3.2.1.22
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57081C12:00.612
    57081C14:06.814
    57081C16:035.516
    57081C18:09.718
    57081C16:1 ω5c115.908
    57081C16:1 ω7c2.515.819
    57081C16:1 ω9c4.315.774
    57081C18:1 ω7c /12t/9t14.317.824
    57081C18:1 ω9c14.317.769
    57081C18:2 ω6,9c/C18:0 ANTE8.617.724
    57081C20:1 ω9c1.119.77
    57081C20:2 ω6,9c0.519.735
    57081Unidentified118.192
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119520-----+-+----++-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119520---------++++-------++++++++++++-+/-+++/--++-+/-------+/-

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
5866-+--+----++++---+++------+--+-+/--
5866-++-+----++++---+++------+--++/-+-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
5866human cerebrospinal fluidFranceFRAEurope
57081Human cerebrospinal fluid,infant
67770Human cerebrospinal fluid
119520Human, Cerebrospinal fluid, infant

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Cerebrospinal fluid
#Infection#Patient

taxonmaps

  • @ref: 69479
  • File name: preview.99_1057.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_100;97_690;98_805;99_1057&stattab=map
  • Last taxonomy: Streptococcus
  • 16S sequence: LC145571
  • Sequence Identity:
  • Total samples: 43761
  • soil counts: 927
  • aquatic counts: 2522
  • animal counts: 39763
  • plant counts: 549

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
5866yesyes2Risk group (German classification)
1195202Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus pasteurianus strain DSM 15351 16S ribosomal RNA gene, partial sequenceDQ118673462nuccore197614
20218Streptococcus pasteurianus strain CIP 107122 16S ribosomal RNA gene, partial sequenceDQ2325281470nuccore197614
5866Streptococcus pasteuri partial 16S rRNA gene, strain NEM1202, CIP 105070AJ2972161466nuccore142596
67770Streptococcus pasteurianus gene for 16S ribosomal RNA, partial sequence, strain: JCM 12261LC1455711455nuccore197614

External links

@ref: 5866

culture collection no.: DSM 15351, CIP 107122, CCUG 46150, NEM 1202, JCM 12261, KCTC 3878, LMG 22270

straininfo link

  • @ref: 83930
  • straininfo: 100969

literature

  • topic: Phylogeny
  • Pubmed-ID: 12148636
  • title: Taxonomic dissection of the Streptococcus bovis group by analysis of manganese-dependent superoxide dismutase gene (sodA) sequences: reclassification of 'Streptococcus infantarius subsp. coli' as Streptococcus lutetiensis sp. nov. and of Streptococcus bovis biotype 11.2 as Streptococcus pasteurianus sp. nov.
  • authors: Poyart C, Quesne G, Trieu-Cuot P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-4-1247
  • year: 2002
  • mesh: Animals, Cattle, DNA, Ribosomal/analysis, Humans, Infant, Newborn, Manganese/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptococcal Infections/microbiology/veterinary, Streptococcus/*classification/enzymology/genetics, Streptococcus bovis/*classification/enzymology/genetics, Superoxide Dismutase/genetics
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5866Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15351)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15351
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
32857Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4523
57081Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 46150)https://www.ccug.se/strain?id=46150
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83930Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100969.1StrainInfo: A central database for resolving microbial strain identifiers
119520Curators of the CIPCollection of Institut Pasteur (CIP 107122)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107122