Strain identifier

BacDive ID: 14808

Type strain: No

Species: Streptococcus gallolyticus

Strain Designation: B7

Strain history: CIP <- 2000, J.L. Garcia, IRD, Provence Univ., Marseille, France: strain B7 <- M. Chamkha, Africa

NCBI tax ID(s): 315405 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 5168

BacDive-ID: 14808

DSM-Number: 13808

keywords: Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped

description: Streptococcus gallolyticus B7 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from anaerobic digester fed with shea cake.

NCBI tax id

  • NCBI tax id: 315405
  • Matching level: species

strain history

@refhistory
5168<- J.-L. Garcia <- A. Traore; B7
119523CIP <- 2000, J.L. Garcia, IRD, Provence Univ., Marseille, France: strain B7 <- M. Chamkha, Africa

doi: 10.13145/bacdive14808.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus gallolyticus
  • full scientific name: Streptococcus gallolyticus Osawa et al. 1996

  • synonyms

    • @ref: 20215
    • synonym: Streptococcus caprinus

@ref: 5168

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus gallolyticus

full scientific name: Streptococcus gallolyticus Osawa et al. 1996 emend. Chamkha et al. 2002 emend. Schlegel et al. 2003

strain designation: B7

type strain: no

Morphology

cell morphology

  • @ref: 119523
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

@refincubation period
51682-3 days
119523

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5168COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
5168TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
33008MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
119523CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
5168positivegrowth37mesophilic
33008positivegrowth37mesophilic
119523positivegrowth25-45
119523nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
5168microaerophile
119523facultative anaerobe

halophily

  • @ref: 119523
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
119523esculin+hydrolysis4853
119523hippurate-hydrolysis606565
119523nitrate-reduction17632
119523nitrite-reduction16301

metabolite tests

  • @ref: 119523
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
119523oxidase-
119523beta-galactosidase+3.2.1.23
119523alcohol dehydrogenase-1.1.1.1
119523catalase-1.11.1.6
119523gamma-glutamyltransferase+2.3.2.2
119523lysine decarboxylase-4.1.1.18
119523ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119523--++-+----+++--++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119523---------++++----+---+++++++++++--+++-+---------+/-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
5168anaerobic digester fed with shea cakeBurkina FasoBFAAfrica
119523Environment, Anaerobic sludge from the pit of a slaughterhouseBurkina FasoBFAAfrica1997

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation#Anaerobic digestor
#Engineered#Industrial
#Condition#Anoxic (anaerobic)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
51682Risk group (German classification)
1195232Risk group (French classification)

Sequence information

GC content

  • @ref: 5168
  • GC-content: 40.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 5168

culture collection no.: DSM 13808, CIP 106781

straininfo link

  • @ref: 83925
  • straininfo: 113528

literature

  • topic: Pathogenicity
  • Pubmed-ID: 36233098
  • title: First Report on the Streptococcusgallolyticus (S. bovis Biotype I) DSM 13808 Exopolysaccharide Structure.
  • authors: Maciejewska A, Lugowski C, Lukasiewicz J
  • journal: Int J Mol Sci
  • DOI: 10.3390/ijms231911797
  • year: 2022
  • mesh: *Bacteremia, Gas Chromatography-Mass Spectrometry, Humans, Phosphates, *Streptococcal Infections/microbiology, Sugars, Virulence Factors

Reference

@idauthorscataloguedoi/urltitle
5168Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13808)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13808
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33008Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18949
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
83925Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID113528.1StrainInfo: A central database for resolving microbial strain identifiers
119523Curators of the CIPCollection of Institut Pasteur (CIP 106781)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106781