Strain identifier
BacDive ID: 14807
Type strain:
Species: Streptococcus peroris
Strain Designation: O-66
Strain history: CIP <- 1999, JCM <- Y. Kawamura: strain GTC848 <- H. Ohkuni: strain O-66
NCBI tax ID(s): 888746 (strain), 68891 (species)
General
@ref: 4747
BacDive-ID: 14807
DSM-Number: 12493
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, human pathogen
description: Streptococcus peroris O-66 is a microaerophile, mesophilic human pathogen that was isolated from human tooth surface.
NCBI tax id
NCBI tax id | Matching level |
---|---|
888746 | strain |
68891 | species |
strain history
@ref | history |
---|---|
4747 | <- JCM <- Y. Kawamura; GTC 848 <- H. Ohkuni; O-66 |
67770 | Y. Kawamura GTC 848 <-- H. Ohkuni O-66. |
121685 | CIP <- 1999, JCM <- Y. Kawamura: strain GTC848 <- H. Ohkuni: strain O-66 |
doi: 10.13145/bacdive14807.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus peroris
- full scientific name: Streptococcus peroris Kawamura et al. 1998
@ref: 4747
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus peroris
full scientific name: Streptococcus peroris Kawamura et al. 1998
strain designation: O-66
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 94.986 | ||
69480 | 100 | positive | ||
121685 | no | positive | coccus-shaped |
colony morphology
@ref | type of hemolysis | hemolysis ability |
---|---|---|
4747 | alpha | 1 |
121685 | 1 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4747 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
4747 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
39406 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
121685 | CIP Medium 45 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45 | |
121685 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
4747 | positive | growth | 37 | mesophilic |
39406 | positive | growth | 37 | mesophilic |
54941 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
121685 | positive | growth | 25-41 | |
121685 | no | growth | 10 | psychrophilic |
121685 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
4747 | microaerophile |
54941 | microaerophile |
121685 | facultative anaerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 99 |
69480 | no | 99.995 |
halophily
- @ref: 121685
- salt: NaCl
- growth: no
- tested relation: growth
- concentration: 6.5 %
murein
- @ref: 4747
- murein short key: A11.61
- type: A3alpha L-Lys-L-Ala(L-Ser)
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | + | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | + | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
121685 | esculin | - | hydrolysis | 4853 |
121685 | hippurate | - | hydrolysis | 606565 |
121685 | nitrate | - | reduction | 17632 |
121685 | nitrite | - | reduction | 16301 |
68381 | arginine | - | hydrolysis | 29016 |
68381 | D-ribose | - | builds acid from | 16988 |
68381 | D-mannitol | - | builds acid from | 16899 |
68381 | sorbitol | - | builds acid from | 30911 |
68381 | trehalose | - | builds acid from | 27082 |
68381 | raffinose | - | builds acid from | 16634 |
68381 | L-arabinose | - | builds acid from | 30849 |
68381 | D-arabitol | - | builds acid from | 18333 |
68381 | alpha-cyclodextrin | - | builds acid from | 40585 |
68381 | glycogen | - | builds acid from | 28087 |
68381 | pullulan | - | builds acid from | 27941 |
68381 | melibiose | - | builds acid from | 28053 |
68381 | melezitose | - | builds acid from | 6731 |
68381 | methyl beta-D-glucopyranoside | - | builds acid from | 320055 |
68381 | D-tagatose | - | builds acid from | 16443 |
68381 | urea | - | hydrolysis | 16199 |
metabolite production
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test |
---|---|---|---|
68381 | 15688 | acetoin | - |
121685 | 15688 | acetoin | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
4747 | catalase | - | 1.11.1.6 |
4747 | cytochrome-c oxidase | - | 1.9.3.1 |
68381 | urease | - | 3.5.1.5 |
68381 | beta-mannosidase | - | 3.2.1.25 |
68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68381 | beta-galactosidase | - | 3.2.1.23 |
68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | |
68381 | alkaline phosphatase | + | 3.1.3.1 |
68381 | alpha-galactosidase | - | 3.2.1.22 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | - | 3.2.1.21 |
68381 | arginine dihydrolase | - | 3.5.3.6 |
121685 | oxidase | - | |
121685 | beta-galactosidase | + | 3.2.1.23 |
121685 | alcohol dehydrogenase | - | 1.1.1.1 |
121685 | catalase | - | 1.11.1.6 |
121685 | gamma-glutamyltransferase | + | 2.3.2.2 |
121685 | lysine decarboxylase | - | 4.1.1.18 |
121685 | ornithine decarboxylase | - | 4.1.1.17 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121685 | - | + | + | + | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121685 | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | + | - | +/- | + | - | - | + | + | - | + | - | - | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
4747 | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - |
4747 | - | - | + | - | - | + | - | - | - | + | - | - | + | - | - | - | - | + | - | - | - | + | - | - | - | + | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|
4747 | human tooth surface | Japan | Japan | JPN | Asia | |
54941 | Human pharynx,8-month-old female,kawasaki disease | Tokyo | Japan | JPN | Asia | 1990 |
67770 | Human tooth surface | |||||
121685 | Human, Pharynx, Kawasaki disease | Tokyo | Japan | JPN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body-Site | #Oral cavity and airways | #Tooth |
taxonmaps
- @ref: 69479
- File name: preview.99_4264.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_4;97_2591;98_3211;99_4264&stattab=map
- Last taxonomy: Streptococcus peroris
- 16S sequence: LC096228
- Sequence Identity:
- Total samples: 18088
- soil counts: 31
- aquatic counts: 392
- animal counts: 17536
- plant counts: 129
Safety information
risk assessment
@ref | pathogenicity human | biosafety level | biosafety level comment |
---|---|---|---|
4747 | yes, in single cases | 1 | Risk group (German classification) |
121685 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
4747 | Streptococcus peroris gene for 16S rRNA, partial sequence | AB008314 | 1339 | ena | 888746 |
67770 | Streptococcus peroris strain CCUG 39814 16S ribosomal RNA gene, partial sequence | EU156772 | 1329 | ena | 888746 |
67770 | Streptococcus peroris gene for 16S ribosomal RNA, partial sequence, strain: JCM 10158 | LC096228 | 1485 | ena | 68891 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptococcus peroris ATCC 700780 | 888746.3 | wgs | patric | 888746 |
66792 | Streptococcus peroris ATCC 700780 | 649990011 | draft | img | 888746 |
67770 | Streptococcus peroris ATCC 700780 | GCA_000187585 | scaffold | ncbi | 888746 |
GC content
@ref | GC-content | method |
---|---|---|
4747 | 39.8 | high performance liquid chromatography (HPLC) |
67770 | 39.8-40.5 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 99 | no |
motile | no | 95.251 | no |
flagellated | no | 96.549 | no |
gram-positive | yes | 93.201 | no |
anaerobic | no | 93.738 | yes |
halophile | yes | 78.476 | no |
spore-forming | no | 94.851 | no |
thermophile | no | 99.281 | no |
glucose-util | yes | 86.128 | no |
aerobic | no | 97.871 | no |
glucose-ferment | yes | 86.448 | no |
External links
@ref: 4747
culture collection no.: CCUG 39814, GTC 848, DSM 12493, ATCC 700780, JCM 10158, CCM 7374, CIP 105950, LMG 18719
straininfo link
- @ref: 83924
- straininfo: 12428
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 9734047 | Streptococcus peroris sp. nov. and Streptococcus infantis sp. nov., new members of the Streptococcus mitis group, isolated from human clinical specimens. | Kawamura Y, Hou XG, Todome Y, Sultana F, Hirose K, Shu SE, Ezaki T, Ohkuni H | Int J Syst Bacteriol | 10.1099/00207713-48-3-921 | 1998 | Base Composition, Base Sequence, Child, Preschool, DNA, Bacterial/analysis, DNA, Ribosomal/chemistry, Humans, Infant, Molecular Sequence Data, Nucleic Acid Hybridization, RNA, Ribosomal, 16S/genetics, Streptococcus/*classification/genetics/isolation & purification | Pathogenicity |
Phylogeny | 20511454 | Streptococcus lactarius sp. nov., isolated from breast milk of healthy women. | Martin V, Manes-Lazaro R, Rodriguez JM, Maldonado-Barragan A | Int J Syst Evol Microbiol | 10.1099/ijs.0.021642-0 | 2010 | DNA, Bacterial/genetics, Female, Humans, Milk, Human/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptococcus/*classification/genetics/*isolation & purification/metabolism | Pathogenicity |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
4747 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12493) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12493 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
39406 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18026 | ||
54941 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 39814) | https://www.ccug.se/strain?id=39814 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68371 | Automatically annotated from API 50CH acid | |||
68381 | Automatically annotated from API rID32STR | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
83924 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID12428.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
121685 | Curators of the CIP | Collection of Institut Pasteur (CIP 105950) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105950 |