Strain identifier

BacDive ID: 14801

Type strain: Yes

Species: Streptococcus dysgalactiae subsp. equisimilis

Strain history: CIP <- 1997, CCUG <- 1996, LMG <- NCFB <- NIRD

NCBI tax ID(s): 119602 (subspecies)

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General

@ref: 16731

BacDive-ID: 14801

DSM-Number: 23147

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped, human pathogen

description: Streptococcus dysgalactiae subsp. equisimilis DSM 23147 is a microaerophile, mesophilic, Gram-positive human pathogen that was isolated from isolate .

NCBI tax id

  • NCBI tax id: 119602
  • Matching level: subspecies

strain history

@refhistory
16731<- CIP <- CCUG <- LMG <- NCFB <- NIRD
118986CIP <- 1997, CCUG <- 1996, LMG <- NCFB <- NIRD

doi: 10.13145/bacdive14801.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus dysgalactiae subsp. equisimilis
  • full scientific name: Streptococcus dysgalactiae subsp. equisimilis Vandamme et al. 1996

@ref: 16731

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus dysgalactiae subsp. equisimilis

full scientific name: Streptococcus dysgalactiae subsp. equisimilis Vandamme et al. 1996 emend. Vieira et al. 1998

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
118986positivecoccus-shapedno
125438no90.5

colony morphology

@reftype of hemolysishemolysis abilityincubation period
16731beta11-2 days
68370beta1
1189861

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16731COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16731TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
38533MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
118986CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
118986CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperature
16731positivegrowth37
38533positivegrowth29
118986positivegrowth25-41
118986nogrowth10
118986nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
16731microaerophile
118986facultative anaerobe
125439obligate aerobe93.7

halophily

  • @ref: 118986
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838116199urea-hydrolysis
6838116443D-tagatose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
6838117306maltose+builds acid from
6838127941pullulan+builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
6838130849L-arabinose-builds acid from
6838116634raffinose+builds acid from
6838117992sucrose-builds acid from
6838127082trehalose+builds acid from
6838130911sorbitol-builds acid from
6838116899D-mannitol-builds acid from
6838116988D-ribose+builds acid from
6838129016arginine+hydrolysis
1189864853esculin-hydrolysis
118986606565hippurate-hydrolysis
11898617632nitrate-reduction
11898616301nitrite-reduction
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117113erythritol-builds acid from
6838117716lactose-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch+builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117057cellobiose-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837028017starch+builds acid from
6837016634raffinose-builds acid from
6837015443inulin-builds acid from
6837027082trehalose+builds acid from
6837017716lactose-builds acid from
6837017924D-sorbitol-builds acid from
6837016899D-mannitol-builds acid from
6837030849L-arabinose-builds acid from
6837016988D-ribose+builds acid from
6837029016arginine+hydrolysis
683704853esculin+hydrolysis
68370606565hippurate-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6838115688acetoinno
6837015688acetoinyes
11898635581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin-
6837015688acetoin+
11898615688acetoin-

enzymes

@refvalueactivityec
16731catalase-1.11.1.6
16731cytochrome-c oxidase-1.9.3.1
68382alpha-fucosidase+3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase+3.2.1.31
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68381urease-3.5.1.5
68381beta-mannosidase+3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase+3.5.3.6
118986oxidase-
118986beta-galactosidase+3.2.1.23
118986alcohol dehydrogenase+1.1.1.1
118986catalase-1.11.1.6
118986gamma-glutamyltransferase-2.3.2.2
118986lysine decarboxylase-4.1.1.18
118986ornithine decarboxylase-4.1.1.17
118986urease-3.5.1.5
68370alpha-galactosidase-3.2.1.22
68370beta-glucosidase+3.2.1.21
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381beta-glucuronidase+3.2.1.31
68382beta-glucosidase-3.2.1.21
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68370arginine dihydrolase+3.5.3.6
68370leucine arylamidase+3.4.11.1
68370alkaline phosphatase+3.1.3.1
68370beta-galactosidase-3.2.1.23
68370beta-glucuronidase+3.2.1.31
68370pyrrolidonyl arylamidase-3.4.19.3

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    65618C12:01.612
    65618C14:04.314
    65618C16:026.316
    65618C18:05.918
    65618C16:1 ω5c1.515.908
    65618C16:1 ω7c8.815.819
    65618C16:1 ω9c6.115.774
    65618C17:1 ISO I/C16:0 DMA116.481
    65618C18:1 ω5c1.917.919
    65618C18:1 ω7c /12t/9t21.217.824
    65618C18:1 ω9c12.217.769
    65618C18:2 ω6,9c/C18:0 ANTE5.117.724
    65618C19:1 ISO I1.218.473
    65618Unidentified1.218.201
    65618Unidentified1.818.234
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118986-+-+-++---++-++----+

API 20STR

@refVPHIPESCPYRAalpha GALbeta GURbeta GALPALLAPADHRIBARAMANSORLACTREINURAFAMDGLYGbeta HEM
16731+-+--+-++++----+--++/-+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
118986+/----+/-----++++--------+/----+/--+/---++---+------------+/-

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
16731+-++-++---++-----+---+--++--+-+-

Isolation, sampling and environmental information

isolation

@refsample type
16731isolate (human)
118986Human, Isolate

isolation source categories

  • Cat1: #Host
  • Cat2: #Human

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
16731yesyes2Risk group (German classification)
1189862Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus dysgalactiae subsp. equisimilis strain CIP 105120 16S ribosomal RNA gene, partial sequenceDQ235084448nuccore119602
20218Streptococcus dysgalactiae subsp. equisimilis strain CCUG 36637 16S ribosomal RNA gene, partial sequenceJN6394321262nuccore119602
16731Streptococcus dysgalactiae subsp. equisimilis strain CIP 105120 16S ribosomal RNA gene, partial sequenceDQ2325401487nuccore119602
124043Streptococcus dysgalactiae gene for 16S rRNA.AB0089261321nuccore119602

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus dysgalactiae strain FDAARGOS_10161334.230completepatric1334
66792Streptococcus dysgalactiae subsp. equisimilis SK12491000589.3wgspatric1000589
66792Streptococcus dysgalactiae DSM 231472926464969draftimg1334

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe93.7
125439BacteriaNetgram_stainReaction to gram-stainingpositive62.5
125439BacteriaNetmotilityAbility to perform movementno67.2
125439BacteriaNetspore_formationAbility to form endo- or exosporesno84.8
125438gram-positivegram-positivePositive reaction to Gram-stainingyes86.555no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no88.284yes
125438spore-formingspore-formingAbility to form endo- or exosporesno84.804no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no95.889yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno97.913no
125438motile2+flagellatedAbility to perform flagellated movementno90.5no

External links

@ref: 16731

culture collection no.: DSM 23147, CCUG 36637, CCUG 36913, CIP 105120, LMG 16026, NCIMB 701356 (formerly NCFB 1356), NCFB 1356, NCTC 4540

straininfo link

  • @ref: 83918
  • straininfo: 92502

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16731Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23147)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23147
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38533Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17105
65618Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 36637)https://www.ccug.se/strain?id=36637
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68370Automatically annotated from API 20STR
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
83918Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92502.1StrainInfo: A central database for resolving microbial strain identifiers
118986Curators of the CIPCollection of Institut Pasteur (CIP 105120)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105120
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1