Strain identifier
BacDive ID: 14792
Type strain:
Species: Streptococcus parasanguinis
Strain Designation: SS 898
Strain history: CIP <- 1995, DSM <- ATCC <- C.K. Williamson, Streptococcus mitis
NCBI tax ID(s): 760570 (strain), 1318 (species)
General
@ref: 2812
BacDive-ID: 14792
DSM-Number: 6778
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive
description: Streptococcus parasanguinis SS 898 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from human throat.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1318 | species |
760570 | strain |
strain history
@ref | history |
---|---|
2812 | <- ATCC <- C.K. Williamson (Streptococcus mitis) |
67771 | <- CCUG <- R Whiley, LHMC, London, UK |
121590 | CIP <- 1995, DSM <- ATCC <- C.K. Williamson, Streptococcus mitis |
doi: 10.13145/bacdive14792.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus parasanguinis
- full scientific name: Streptococcus parasanguinis corrig. Whiley et al. 1990
synonyms
- @ref: 20215
- synonym: Streptococcus parasanguis
@ref: 2812
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus parasanguinis
full scientific name: Streptococcus parasanguinis Whiley et al. 1990
strain designation: SS 898
type strain: yes
Morphology
cell morphology
@ref | gram stain | motility | confidence |
---|---|---|---|
67771 | positive | ||
69480 | no | 94.901 | |
69480 | positive | 100 |
colony morphology
- @ref: 2812
- type of hemolysis: alpha
- hemolysis ability: 1
- incubation period: 1-2 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
2812 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
2812 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
34689 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
121590 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2812 | positive | growth | 37 | mesophilic |
34689 | positive | growth | 37 | mesophilic |
67771 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
2812 | microaerophile |
67771 | microaerophile |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.99 |
murein
- @ref: 2812
- murein short key: A11.50
- type: A3alpha L-Lys-L-Ala-Gly
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68381 | 16988 | D-ribose | - | builds acid from |
68381 | 16899 | D-mannitol | - | builds acid from |
68381 | 30911 | sorbitol | - | builds acid from |
68381 | 17716 | lactose | + | builds acid from |
68381 | 27082 | trehalose | + | builds acid from |
68381 | 16634 | raffinose | + | builds acid from |
68381 | 17992 | sucrose | + | builds acid from |
68381 | 30849 | L-arabinose | - | builds acid from |
68381 | 18333 | D-arabitol | - | builds acid from |
68381 | 40585 | alpha-cyclodextrin | - | builds acid from |
68381 | 28087 | glycogen | - | builds acid from |
68381 | 27941 | pullulan | - | builds acid from |
68381 | 17306 | maltose | + | builds acid from |
68381 | 6731 | melezitose | - | builds acid from |
68381 | 16443 | D-tagatose | + | builds acid from |
68381 | 16199 | urea | - | hydrolysis |
metabolite production
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- production: no
metabolite tests
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
2812 | catalase | + | 1.11.1.6 |
2812 | cytochrome-c oxidase | - | 1.9.3.1 |
68381 | urease | - | 3.5.1.5 |
68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | |
68381 | alkaline phosphatase | + | 3.1.3.1 |
68381 | alpha-galactosidase | + | 3.2.1.22 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | + | 3.2.1.21 |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2812 | + | + | + | - | + | + | - | - | - | + | + | + | + | - | - | - | - | + | + | - | + | + | - | - | - | + | - | - | + | + | + | - |
2812 | - | + | + | - | + | + | - | - | - | + | + | + | + | - | - | - | - | + | - | - | - | - | + | - | - | + | - | - | - | + | - | - |
2812 | - | + | + | - | + | + | - | - | - | + | + | + | + | - | - | - | - | + | + | - | + | + | - | - | - | + | + | - | + | + | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
2812 | human throat |
50067 | Human throat |
67771 | From Human throat |
121590 | Human, Throat |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body-Site | #Oral cavity and airways | #Throat |
taxonmaps
- @ref: 69479
- File name: preview.99_2235.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_4;97_4;98_204;99_2235&stattab=map
- Last taxonomy: Streptococcus
- 16S sequence: AY485605
- Sequence Identity:
- Total samples: 11057
- soil counts: 43
- aquatic counts: 182
- animal counts: 10697
- plant counts: 135
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
2812 | 2 | Risk group (German classification) |
121590 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptococcus parasanguis 16S ribosomal RNA gene, complete sequence | AF003933 | 1513 | ena | 760570 |
20218 | Streptococcus parasanguinis strain ATCC 15912 16S-23S ribosomal RNA intergenic spacer, partial sequence | AY351320 | 249 | ena | 760570 |
20218 | Streptococcus parasanguinis strain ATCC 15912 16S small subunit ribosomal RNA gene, partial sequence | AY485605 | 1470 | ena | 760570 |
20218 | Streptococcus parasanguinis strain ATCC 15912 16S ribosomal RNA gene, partial sequence | DQ303191 | 1464 | ena | 760570 |
20218 | Streptococcus parasanguinis strain ATCC 15912 16S ribosomal RNA gene, partial sequence | EU156771 | 1329 | ena | 760570 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptococcus parasanguinis ATCC 15912 | GCA_000164675 | complete | ncbi | 760570 |
66792 | Streptococcus parasanguinis ATCC 15912 | 760570.3 | wgs | patric | 760570 |
66792 | Streptococcus parasanguinis ATCC 15912 | 650716089 | complete | img | 760570 |
GC content
@ref | GC-content | method |
---|---|---|
2812 | 42 | thermal denaturation, midpoint method (Tm) |
67771 | 42.0 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 94.503 | no |
flagellated | no | 96.078 | no |
gram-positive | yes | 94.172 | yes |
anaerobic | no | 94.113 | no |
aerobic | no | 97.611 | no |
halophile | yes | 66.349 | no |
spore-forming | no | 91.454 | no |
thermophile | no | 99.089 | yes |
glucose-util | yes | 87.919 | no |
glucose-ferment | yes | 87.373 | no |
External links
@ref: 2812
culture collection no.: CCUG 30417, LMG 14537, KCTC 15406, DSM 6778, ATCC 15912, CIP 13046, CIP 104372, KCTC 13046
straininfo link
- @ref: 83909
- straininfo: 8050
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 1692001 | Streptococcus parasanguis sp. nov., an atypical viridans Streptococcus from human clinical specimens. | Whiley RA, Fraser HY, Douglas CW, Hardie JM, Williams AM, Collins MD | FEMS Microbiol Lett | 10.1111/j.1574-6968.1990.tb04133.x | 1990 | Base Sequence, DNA, Bacterial/genetics, Humans, Molecular Sequence Data, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Serotyping, Streptococcus/*classification/genetics | Pathogenicity |
Phylogeny | 27473166 | Streptococcusmarmotae sp. nov., isolated from the respiratory tract of Marmota himalayana. | Niu L, Lu S, Hu S, Jin D, Lai X, Yang J, Chen C, Wang Y, Wang Y, Bai X, Lan R, Lv G, Xie Y, Ye C, Xu J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001350 | 2016 | Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Genes, Bacterial, Marmota/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Respiratory System/*microbiology, Sequence Analysis, DNA, Streptococcus/*classification/genetics/isolation & purification | Transcriptome |
Phylogeny | 31570960 | Streptococcus koreensis sp. nov., Isolated from Human Subgingival Dental Plaque of Periodontitis Lesion. | Lim YK, Park SN, Shin JH, Ji S, Jo E, Chang YH, Shin Y, Paek J, Kim H, Kook JK | Curr Microbiol | 10.1007/s00284-019-01778-6 | 2019 | Base Composition, DNA, Bacterial/genetics, Dental Plaque/*microbiology, Fatty Acids/chemistry, Genome, Bacterial/genetics, Humans, Nucleic Acid Hybridization, Periodontitis/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Streptococcus/chemistry/*classification/cytology/genetics | Genetics |
Phylogeny | 33133039 | Streptococcus xiaochunlingii sp. nov. E24 Isolated From the Oropharynx of Healthy Chinese Children. | Zou Y, Sun Y, Qi H, Liu D, Tian H, Wang N, Li X | Front Microbiol | 10.3389/fmicb.2020.563213 | 2020 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2812 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6778) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6778 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
34689 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/16273 | ||||
50067 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 30417) | https://www.ccug.se/strain?id=30417 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
68381 | Automatically annotated from API rID32STR | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
83909 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID8050.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
121590 | Curators of the CIP | Collection of Institut Pasteur (CIP 104372) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104372 |