Strain identifier

BacDive ID: 14792

Type strain: Yes

Species: Streptococcus parasanguinis

Strain Designation: SS 898

Strain history: CIP <- 1995, DSM <- ATCC <- C.K. Williamson, Streptococcus mitis

NCBI tax ID(s): 760570 (strain), 1318 (species)

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General

@ref: 2812

BacDive-ID: 14792

DSM-Number: 6778

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive

description: Streptococcus parasanguinis SS 898 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from human throat.

NCBI tax id

NCBI tax idMatching level
760570strain
1318species

strain history

@refhistory
2812<- ATCC; ATCC 15912 <- C.K. Williamson; SS 898 (Streptococcus mitis)
67771<- CCUG <- R Whiley, LHMC, London, UK
121590CIP <- 1995, DSM <- ATCC <- C.K. Williamson, Streptococcus mitis

doi: 10.13145/bacdive14792.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus parasanguinis
  • full scientific name: Streptococcus parasanguinis corrig. Whiley et al. 1990

  • synonyms

    • @ref: 20215
    • synonym: Streptococcus parasanguis

@ref: 2812

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus parasanguinis

full scientific name: Streptococcus parasanguinis Whiley et al. 1990

strain designation: SS 898

type strain: yes

Morphology

cell morphology

@refgram stainconfidencemotility
67771positive
125439positive93.1
12543991.2no
12543890.5no

colony morphology

  • @ref: 2812
  • type of hemolysis: alpha
  • hemolysis ability: 1
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2812TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
2812COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
34689MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
121590CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperature
2812positivegrowth37
34689positivegrowth37
67771positivegrowth37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
2812microaerophile
67771microaerophile
125439microaerophile98.6

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 96.3

murein

  • @ref: 2812
  • murein short key: A11.50
  • type: A3alpha L-Lys-L-Ala-Gly

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838116199urea-hydrolysis
683816731melezitose-builds acid from
6838117306maltose+builds acid from
6838127941pullulan-builds acid from
6838128087glycogen-builds acid from
6838140585alpha-cyclodextrin-builds acid from
6838118333D-arabitol-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838116634raffinose+builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838116899D-mannitol-builds acid from
6838116988D-ribose-builds acid from
6838116443D-tagatose+builds acid from
6838130911sorbitol-builds acid from

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
2812catalase+1.11.1.6
2812cytochrome-c oxidase-1.9.3.1
68381pyrrolidonyl arylamidase-3.4.19.3
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381urease-3.5.1.5

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
2812+++-++---++++----++-++---+--+++-
2812-++-++---++++----+----+--+---+--
2812-++-++---++++----++-++---++-+++-
2812+++-++---++++----++-++---+--+++-

Isolation, sampling and environmental information

isolation

@refsample type
2812human throat
50067Human throat
67771From Human throat
121590Human, Throat

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Throat

taxonmaps

  • @ref: 69479
  • File name: preview.99_2235.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_4;97_4;98_204;99_2235&stattab=map
  • Last taxonomy: Streptococcus
  • 16S sequence: AY485605
  • Sequence Identity:
  • Total samples: 11057
  • soil counts: 43
  • aquatic counts: 182
  • animal counts: 10697
  • plant counts: 135

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
28122Risk group (German classification)
1215902Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus parasanguis 16S ribosomal RNA gene, complete sequenceAF0039331513nuccore760570
20218Streptococcus parasanguinis strain ATCC 15912 16S-23S ribosomal RNA intergenic spacer, partial sequenceAY351320249nuccore760570
20218Streptococcus parasanguinis strain ATCC 15912 16S small subunit ribosomal RNA gene, partial sequenceAY4856051470nuccore760570
20218Streptococcus parasanguinis strain ATCC 15912 16S ribosomal RNA gene, partial sequenceDQ3031911464nuccore760570
20218Streptococcus parasanguinis strain ATCC 15912 16S ribosomal RNA gene, partial sequenceEU1567711329nuccore760570
124043Streptococcus parasanguinis strain KCTC 13046 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.HM241935460nuccore1318

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus parasanguinis ATCC 15912GCA_000164675completencbi760570
66792Streptococcus parasanguinis ATCC 15912760570.3wgspatric760570
66792Streptococcus parasanguinis ATCC 15912650716089completeimg760570

GC content

@refGC-contentmethod
281242thermal denaturation, midpoint method (Tm)
6777142.0thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes87.747yes
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no90.67yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no96.556no
125438spore-formingspore-formingAbility to form endo- or exosporesno82.603no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno97.278yes
125438motile2+flagellatedAbility to perform flagellated movementno90.5no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno96.3
125439BacteriaNetmotilityAbility to perform movementno91.2
125439BacteriaNetgram_stainReaction to gram-stainingpositive93.1
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthmicroaerophile98.6

External links

@ref: 2812

culture collection no.: CCUG 30417, LMG 14537, KCTC 15406, DSM 6778, ATCC 15912, CIP 13046, CIP 104372, KCTC 13046

straininfo link

  • @ref: 83909
  • straininfo: 8050

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny1692001Streptococcus parasanguis sp. nov., an atypical viridans Streptococcus from human clinical specimens.Whiley RA, Fraser HY, Douglas CW, Hardie JM, Williams AM, Collins MDFEMS Microbiol Lett10.1111/j.1574-6968.1990.tb04133.x1990Base Sequence, DNA, Bacterial/genetics, Humans, Molecular Sequence Data, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Serotyping, Streptococcus/*classification/geneticsPathogenicity
Phylogeny27473166Streptococcusmarmotae sp. nov., isolated from the respiratory tract of Marmota himalayana.Niu L, Lu S, Hu S, Jin D, Lai X, Yang J, Chen C, Wang Y, Wang Y, Bai X, Lan R, Lv G, Xie Y, Ye C, Xu JInt J Syst Evol Microbiol10.1099/ijsem.0.0013502016Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Genes, Bacterial, Marmota/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Respiratory System/*microbiology, Sequence Analysis, DNA, Streptococcus/*classification/genetics/isolation & purificationTranscriptome
Phylogeny31570960Streptococcus koreensis sp. nov., Isolated from Human Subgingival Dental Plaque of Periodontitis Lesion.Lim YK, Park SN, Shin JH, Ji S, Jo E, Chang YH, Shin Y, Paek J, Kim H, Kook JKCurr Microbiol10.1007/s00284-019-01778-62019Base Composition, DNA, Bacterial/genetics, Dental Plaque/*microbiology, Fatty Acids/chemistry, Genome, Bacterial/genetics, Humans, Nucleic Acid Hybridization, Periodontitis/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Streptococcus/chemistry/*classification/cytology/geneticsGenetics
Phylogeny33133039Streptococcus xiaochunlingii sp. nov. E24 Isolated From the Oropharynx of Healthy Chinese Children.Zou Y, Sun Y, Qi H, Liu D, Tian H, Wang N, Li XFront Microbiol10.3389/fmicb.2020.5632132020

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2812Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6778)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6778
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34689Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16273
50067Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30417)https://www.ccug.se/strain?id=30417
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68381Automatically annotated from API rID32STR
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83909Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8050.1StrainInfo: A central database for resolving microbial strain identifiers
121590Curators of the CIPCollection of Institut Pasteur (CIP 104372)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104372
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1