Strain identifier

BacDive ID: 147819

Type strain: No

Species: Aggregatibacter aphrophilus

NCBI tax ID(s): 732 (species)

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General

@ref: 52035

BacDive-ID: 147819

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Aggregatibacter aphrophilus CCUG 34290 is a microaerophile, mesophilic bacterium of the family Pasteurellaceae.

NCBI tax id

  • NCBI tax id: 732
  • Matching level: species

doi: 10.13145/bacdive147819.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Aggregatibacter
  • species: Aggregatibacter aphrophilus
  • full scientific name: Aggregatibacter aphrophilus (Khairat 1940) Nørskov-Lauritsen and Kilian 2006

  • synonyms

    @refsynonym
    20215Haemophilus paraphrophilus
    20215Haemophilus aphrophilus

@ref: 52035

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Aggregatibacter

species: Aggregatibacter aphrophilus

type strain: no

Morphology

cell morphology

@refgram stainconfidencemotility
125439negative99.4
12543890.988no
125438negative97.938

Culture and growth conditions

culture temp

  • @ref: 52035
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
52035microaerophile
125439obligate aerobe92.2

spore formation

@refspore formationconfidence
125439no99.4
125438no90.561

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837727897tryptophan-energy source
6837716199urea-hydrolysis
6837718257ornithine-degradation
6837717992sucrose+builds acid from
6837717306maltose+builds acid from
6837715824D-fructose+builds acid from
6837717634D-glucose+builds acid from

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
52035-+---+----++--------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
52035-++++---+----

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
124043Aggregatibacter aphrophilus strain ATCC 7901 16S ribosomal RNA gene, partial sequence.HQ0095081426nuccore732
124043Aggregatibacter aphrophilus strain ATCC 7901 16S ribosomal RNA gene, partial sequence.M750401480nuccore732

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aggregatibacter aphrophilus ATCC 7901GCA_001680805scaffoldncbi732
66792Aggregatibacter aphrophilus strain ATCC 7901732.23wgspatric732
66792Aggregatibacter aphrophilus ATCC 79012834846146draftimg732

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno97.938no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no93.195no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no84.506no
125438spore-formingspore-formingAbility to form endo- or exosporesno90.561no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno98yes
125438motile2+flagellatedAbility to perform flagellated movementno90.988no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno99.4
125439BacteriaNetmotilityAbility to perform movementno66.8
125439BacteriaNetgram_stainReaction to gram-stainingnegative99.4
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe92.2

External links

@ref: 52035

culture collection no.: CCUG 34290, ATCC 7901

straininfo link

  • @ref: 102488
  • straininfo: 34888

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny3767569Relationships among isolates of oral haemophili as determined by DNA-DNA hybridization.Potts TV, Mitra T, O'Keefe T, Zambon JJ, Genco RJArch Microbiol10.1007/BF004467701986Actinobacillus/*classification/genetics, Cytosine/analysis, DNA, Bacterial/*analysis, Guanine/analysis, Haemophilus/*classification/genetics, Humans, Nucleic Acid Hybridization, Sequence Homology, Nucleic AcidPathogenicity
Enzymology29381805A loop-mediated isothermal amplification procedure targeting the sodA gene for rapid and specific identification of Gallibacterium anatis.Stepien-Pysniak D, Kosikowska U, Hauschild T, Burzynski A, Wilczynski J, Kolinska A, Nowaczek A, Marek APoult Sci10.3382/ps/pex4202018Animals, Bacterial Proteins/*isolation & purification, *Chickens, Female, Nucleic Acid Amplification Techniques/methods/*veterinary, Pasteurellaceae/*isolation & purification, Pasteurellaceae Infections/diagnosis/microbiology/*veterinary, Poultry Diseases/*diagnosis/microbiology, Superoxide Dismutase/*isolation & purification, *TurkeysPhylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
52035Curators of the CCUGhttps://www.ccug.se/strain?id=34290Culture Collection University of Gothenburg (CCUG) (CCUG 34290)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68377Automatically annotated from API NH
68382Automatically annotated from API zym
102488Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID34888.1
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG