Strain identifier

BacDive ID: 14749

Type strain: Yes

Species: Streptococcus pneumoniae

Strain Designation: SV 1, SV1

Strain history: CIP <- 1987, NCTC <- 1948, S.D. Elliot: strain SV1 <- Rockfeller Inst., USA, Diplococcus pneumoniae

NCBI tax ID(s): 1313 (species)

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General

@ref: 8916

BacDive-ID: 14749

DSM-Number: 20566

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped, antibiotic resistance, human pathogen

description: Streptococcus pneumoniae SV 1 is a microaerophile, mesophilic, Gram-positive human pathogen that has multiple antibiotic resistances.

NCBI tax id

  • NCBI tax id: 1313
  • Matching level: species

strain history

@refhistory
8916<- NCTC <- S.D. Elliott, SV 1 <- Rockefeller Inst. f. Med. Res
121895CIP <- 1987, NCTC <- 1948, S.D. Elliot: strain SV1 <- Rockfeller Inst., USA, Diplococcus pneumoniae

doi: 10.13145/bacdive14749.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus pneumoniae
  • full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Micrococcus pneumoniae
    20215Staphylococcus pneumoniae

@ref: 8916

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus pneumoniae

full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901

strain designation: SV 1, SV1

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
121895positivecoccus-shapedno
125438positive90.998

colony morphology

@reftype of hemolysishemolysis abilityincubation period
8916alpha11-2 days
1218951

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8916TODD-HEWITT MEDIUM (DSMZ Medium 697)yeshttps://mediadive.dsmz.de/medium/697Name: TODD-HEWITT MEDIUM (DSMZ Medium 697) Composition: Casein peptone 20.0 g/l Meat infusion 10.0 g/l NaCl 2.0 g/l NaHCO3 2.0 g/l Dextrose 2.0 g/l Na2HPO4 0.4 g/l Distilled water
8916COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
40479MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
121895CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperature
8916positivegrowth37
40479positivegrowth37
49290positivegrowth37
121895positivegrowth25-37
121895nogrowth10
121895nogrowth41
121895nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
8916microaerophile
49290microaerophile
121895facultative anaerobe
125439microaerophile97.8

antibiogram

@refmediumincubation temperatureincubation timeoxygen conditionPenicillin Goxacillinampicillinticarcillinmezlocillincefalotincefazolincefotaximeaztreonamimipenemtetracyclinechloramphenicolgentamycinamikacinvancomycinerythromycinlincomycinofloxacinnorfloxacincolistinpipemidic acidnitrofurantoinbacitracinpolymyxin bkanamycinneomycindoxycyclineceftriaxoneclindamycinfosfomycinmoxifloxacinlinezolidnystatinquinupristin/dalfopristinteicoplaninpiperacillin/tazobactam
8916M 693371microaerophil38-4032404040384040104628306820-22262616140028-3024000284032202232020-221838-40
8916M 693371microaerophil4838484848464448048-50303210824323018180030240603042-44322226340222040
8916M 6933748-5038-4048-50505046504805032301216-182228-302220180028-3024081030n.d.n.d.n.d.n.d.n.d.n.d.n.d.n.d.n.d.

halophily

  • @ref: 121895
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

murein

  • @ref: 8916
  • murein short key: A11.09
  • type: A3alpha L-Lys-L-Ala-L-Ala(L-Ser)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
683816731melezitose-builds acid from
6838117306maltose+builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838118333D-arabitol-builds acid from
6838130911sorbitol-builds acid from
6838116899D-mannitol-builds acid from
6838116988D-ribose-builds acid from
1218954853esculin-hydrolysis
121895606565hippurate+hydrolysis
12189517632nitrate-reduction
12189516301nitrite-reduction
68371Potassium 5-ketogluconate+builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
6838128087glycogen-builds acid from
6838130849L-arabinose-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose+builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose+builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
6837159640N-acetylglucosamine+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837028087glycogen-builds acid from
6837028017starch-builds acid from
6837016634raffinose+builds acid from
6837015443inulin+builds acid from
6837027082trehalose+builds acid from
6837017716lactose+builds acid from
6837017924D-sorbitol-builds acid from
6837016899D-mannitol-builds acid from
6837030849L-arabinose-builds acid from
6837016988D-ribose-builds acid from
6837029016arginine+hydrolysis
68370606565hippurate-hydrolysis

antibiotic resistance

@refmetaboliteis antibioticis sensitiveis resistantChEBI
1218950129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesyesno
121895optochinyesyesno86455

metabolite production

@refChebi-IDmetaboliteproduction
6838115688acetoinno
6837015688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin-
6837015688acetoin-
12189515688acetoin+

enzymes

@refvalueactivityec
8916cytochrome-c oxidase-1.9.3.1
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382alpha-galactosidase+3.2.1.22
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
68381glycyl tryptophan arylamidase+
68381pyrrolidonyl arylamidase+3.4.19.3
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alpha-galactosidase+3.2.1.22
68381alkaline phosphatase-3.1.3.1
68381beta-glucuronidase-3.2.1.31
121895oxidase-
121895beta-galactosidase+3.2.1.23
121895alcohol dehydrogenase-1.1.1.1
121895catalase-1.11.1.6
121895gamma-glutamyltransferase-2.3.2.2
121895lysine decarboxylase-4.1.1.18
121895ornithine decarboxylase-4.1.1.17
68370alpha-galactosidase-3.2.1.22
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68370arginine dihydrolase+3.5.3.6
68370leucine arylamidase+3.4.11.1
68370alkaline phosphatase-3.1.3.1
68370beta-galactosidase+3.2.1.23
68370beta-glucuronidase-3.2.1.31

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121895---+-++--+-++--+-+--

API 20STR

@refVPHIPESCPYRAalpha GALbeta GURbeta GALPALLAPADHRIBARAMANSORLACTREINURAFAMDGLYGbeta HEM
8916--+/-+/---+-++----++++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121895---------++++--------++/-----+++++--+-------------+

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
8916+++-+----++++----+-+++--++--++--
8916+++-+----++++----++/-+++--+++---+/--
8916+++-+----++++----+++++--+++/--+/-+/---
8916--+-+-------+/-----+-+++---+------
8916--+-+----++++----+-+-+---+------
8916-++-+----++++----+-+++--+++-++--
8916-++-+----++++----++/-+++--++--++--
8916-++-+----++++----+++++--++--+/-+-+/-
8916-++-+----++++----+++++--+++/--+/-+--
8916-++-+----++++----+++++--+++/--+/-+--

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_4.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_4;97_4;98_4;99_4&stattab=map
  • Last taxonomy: Streptococcus
  • 16S sequence: AY485600
  • Sequence Identity:
  • Total samples: 59292
  • soil counts: 819
  • aquatic counts: 1515
  • animal counts: 56551
  • plant counts: 407

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
8916yesyes2Risk group (German classification)
1218952Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus pneumoniae strain ATCC 33400 16S-23S ribosomal RNA intergenic spacer, complete sequenceAY347557249nuccore1313
20218Streptococcus pneumoniae strain ATCC 33400 16S small subunit ribosomal RNA gene, partial sequenceAY4856001468nuccore1313
20218Streptococcus pneumoniae strain ATCC 33400 16S ribosomal RNA gene, partial sequenceGU3262441426nuccore1313
20218Streptococcus pneumoniae strain BCRC 14733 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequenceDQ204562372nuccore1313
20218Streptococcus pneumoniae strain DSMZ 20566 16S ribosomal RNA gene, partial sequenceAY775561456nuccore1313
20218Streptococcus pneumoniae strain DSM 20566 16S ribosomal RNA gene, partial sequenceHQ012009936nuccore1313
20218Streptococcus pneumoniae strain KCTC 5080 16S ribosomal RNA gene, partial sequenceGU0453941427nuccore1313
20218Streptococcus pneumoniae strain KCTC 5080 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceHM241931459nuccore1313
20218Streptococcus pneumoniae gene for 16S rRNA, partial sequence, strain: NBRC 102642AB6818931471nuccore1313
20218Streptococcus pneumoniae 16S ribosomal RNA, 5' end, strain NCTC 7465 TAJ001246734nuccore1313
20218Streptococcus pneumoniae 16S ribosomal RNA, 3' end, strain NCTC 7465 TAJ001247627nuccore1313
20218S.pneumoniae 16S rRNAX583121334nuccore1313
8916Streptococcus pneumoniae 16S ribosomal RNA gene, complete sequenceAF0039301515nuccore1313
124043Streptococcus pneumoniae ATCC 33400 gene for 16S rRNA, partial sequence.LC752309588nuccore1313
124043Streptococcus pneumoniae strain ATCC 33400 16S ribosomal RNA gene, partial sequence.OR5013731410nuccore1313

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus pneumoniae NCTC7465GCA_001457635completencbi1313
66792Streptococcus pneumoniae CCUG 28588GCA_001679535scaffoldncbi1313
66792Streptococcus pneumoniae CCUG 28588GCA_001679515contigncbi1313
66792Streptococcus pneumoniae strain CCUG 285881313.9968wgspatric1313
66792Streptococcus pneumoniae strain CCUG 285881313.9967wgspatric1313
66792Streptococcus pneumoniae strain NCTC74651313.6914completepatric1313
66792Streptococcus pneumoniae NCTC74652663763358completeimg1313

GC content

  • @ref: 8916
  • GC-content: 36.0

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes90.998no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no89.36yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no97.287yes
125438spore-formingspore-formingAbility to form endo- or exosporesno82.871no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96.5yes
125438motile2+flagellatedAbility to perform flagellated movementno88.979no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno88.3
125439BacteriaNetmotilityAbility to perform movementno69.1
125439BacteriaNetgram_stainReaction to gram-stainingpositive87.7
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthmicroaerophile97.8

External links

@ref: 8916

culture collection no.: DSM 20566, ATCC 33400, NCTC 7465, CCUG 28588, LMG 14545, CIP 102911

straininfo link

  • @ref: 83866
  • straininfo: 8062

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics9184360Non-gyrA-mediated ciprofloxacin resistance in laboratory mutants of Streptococcus pneumoniae.Piddock LJ, Jin YF, Everett MJJ Antimicrob Chemother10.1093/jac/39.5.6091997Amino Acid Sequence, Anti-Infective Agents/*pharmacology, Base Sequence, Ciprofloxacin/pharmacokinetics/*pharmacology, DNA Gyrase, DNA Topoisomerases, Type II/*physiology, Drug Resistance, Microbial, Molecular Sequence Data, Streptococcus pneumoniae/*drug effects/growth & developmentEnzymology
Pathogenicity10382874Antimicrobial activity and accumulation of moxifloxacin in quinolone-susceptible bacteria.Piddock LJ, Jin YFJ Antimicrob Chemother10.1093/jac/43.suppl_2.391999Anti-Infective Agents/pharmacokinetics/*pharmacology, *Aza Compounds, Ciprofloxacin/pharmacology, Escherichia coli/drug effects, *Fluoroquinolones, Gram-Negative Bacteria/*drug effects/metabolism, Gram-Positive Bacteria/*drug effects/metabolism, Haemophilus influenzae/drug effects, Microbial Sensitivity Tests, Moraxella catarrhalis/drug effects, Moxifloxacin, Pseudomonas aeruginosa/drug effects, *Quinolines, Staphylococcus aureus/drug effects, Streptococcus pneumoniae/drug effectsMetabolism
Pathogenicity10685108Antibacterial activity of diospyrin, isodiospyrin and bisisodiospyrin from the root of Diospyros piscatoria (Gurke) (Ebenaceae).Adeniyi BA, Fong HH, Pezzuto JM, Luyengi L, Odelola HAPhytother Res10.1002/(sici)1099-1573(200003)14:2<112::aid-ptr488>3.0.co;2-t2000Anti-Bacterial Agents/isolation & purification/*pharmacology, Bacillus/drug effects, Microbial Sensitivity Tests, Mycobacterium/drug effects, Naphthoquinones/chemistry/isolation & purification/*pharmacology, Plant Extracts/isolation & purification/*pharmacology, Plant Roots/chemistry, Salmonella/drug effects, Streptococcus/drug effectsEnzymology
Pathogenicity10844660Species-specific binding of human secretory component to SpsA protein of Streptococcus pneumoniae via a hexapeptide motif.Hammerschmidt S, Tillig MP, Wolff S, Vaerman JP, Chhatwal GSMol Microbiol10.1046/j.1365-2958.2000.01897.x2000Amino Acid Sequence, Animals, Bacterial Proteins/*chemistry/*immunology, Binding Sites, Antibody, Guinea Pigs, Humans, Immunoglobulin A, Secretory/*chemistry, Mice, Molecular Sequence Data, Rabbits, Rats, Secretory Component/*chemistry/*metabolism, Species Specificity, Streptococcus pneumoniae/*immunologyGenetics
Phylogeny16377697Global transcriptome analysis of the responses of a fluoroquinolone-resistant Streptococcus pneumoniae mutant and its parent to ciprofloxacin.Marrer E, Satoh AT, Johnson MM, Piddock LJ, Page MGAntimicrob Agents Chemother10.1128/AAC.50.1.269-278.20062006Ciprofloxacin/*pharmacology, DNA, Bacterial/genetics, *Drug Resistance, Bacterial, Fluoroquinolones/*pharmacology, *Gene Expression Profiling, Gene Expression Regulation, Bacterial/*genetics, Microarray Analysis, Phylogeny, Streptococcus pneumoniae/*drug effects/genetics, *Transcription, GeneticTranscriptome
Biotechnology18077037Lactobacillus fermentum ACA-DC 179 displays probiotic potential in vitro and protects against trinitrobenzene sulfonic acid (TNBS)-induced colitis and Salmonella infection in murine models.Zoumpopoulou G, Foligne B, Christodoulou K, Grangette C, Pot B, Tsakalidou EInt J Food Microbiol10.1016/j.ijfoodmicro.2007.10.0132007Animals, *Antibiosis, Cell-Free System, Colitis/chemically induced/microbiology/*prevention & control, Colony Count, Microbial, Cytokines/biosynthesis, Disease Models, Animal, Female, *Food Microbiology, Humans, Hydrogen-Ion Concentration, Lactobacillus fermentum/*physiology, Lactobacillus plantarum/growth & development/physiology, Leukocytes, Mononuclear, Mice, Mice, Inbred BALB C, *Probiotics, Salmonella Infections/microbiology/*prevention & control, Streptococcus/growth & development/physiology, Trinitrobenzenesulfonic Acid/toxicityPathogenicity
Pathogenicity18362193The efflux pump inhibitor reserpine selects multidrug-resistant Streptococcus pneumoniae strains that overexpress the ABC transporters PatA and PatB.Garvey MI, Piddock LJAntimicrob Agents Chemother10.1128/AAC.01644-072008ATP-Binding Cassette Transporters/*genetics/physiology, Bacterial Proteins/*genetics/physiology, Biological Transport/drug effects, Ciprofloxacin/metabolism/pharmacokinetics, Drug Resistance, Multiple, Bacterial/genetics, Ethidium/metabolism/pharmacokinetics, Gene Order, Mutation, Polymerase Chain Reaction, Protein Isoforms/genetics/physiology, Reserpine/*pharmacology, Streptococcus pneumoniae/*drug effects/genetics/metabolism, Vanadates/pharmacologyMetabolism
Pathogenicity24610586Effective oral health in infective endocarditis: efficacy of high-street mouthwashes against the viridans group streptococci.Elshibly A, Coulter WA, Millar BC, Prendergast BD, Thornhill M, Irwin C, Goldsmith CE, Moore JEJ Investig Clin Dent10.1111/jicd.120882014Anti-Infective Agents, Local/*pharmacology, Bacteriological Techniques, Cetylpyridinium/pharmacology, Chlorhexidine/analogs & derivatives/pharmacology, Drug Combinations, Endocarditis, Bacterial/*microbiology, Humans, Mouth/*microbiology, Mouthwashes/*pharmacology, Oral Health, Salicylates/pharmacology, Streptococcal Infections/*microbiology, Streptococcus/drug effects, Streptococcus gordonii/drug effects, Streptococcus intermedius/drug effects, Streptococcus mutans/drug effects, Streptococcus oralis/drug effects, Streptococcus pneumoniae/drug effects, Terpenes/pharmacology, Viridans Streptococci/*drug effects
Phylogeny31332483Streptococcus chosunense sp. nov., Isolated from Human Postoperative Maxillary Cyst.Lim YK, Park SN, Shin JH, Chang YH, Shin Y, Paek J, Kim H, Kook JKCurr Microbiol10.1007/s00284-019-01746-02019Base Composition, Cysts/*microbiology, DNA, Bacterial/chemistry/genetics, Fatty Acids/chemistry, Genome, Bacterial/genetics, Humans, Male, Maxillary Diseases/*microbiology, Middle Aged, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Species Specificity, Streptococcus/chemistry/*classification/genetics/*physiologyGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8916Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20566)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20566
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40479Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14650
49290Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 28588)https://www.ccug.se/strain?id=28588
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68370Automatically annotated from API 20STR
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83866Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8062.1StrainInfo: A central database for resolving microbial strain identifiers
121895Curators of the CIPCollection of Institut Pasteur (CIP 102911)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102911
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1