Strain identifier

BacDive ID: 14748

Type strain: No

Species: Streptococcus pneumoniae

Strain history: <- R. Hammann, Becton Dickinson, Heidelberg; <- ATCC; ATCC 6305 <- B.E. Eddy;

NCBI tax ID(s): 1313 (species)

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General

@ref: 5328

BacDive-ID: 14748

DSM-Number: 14378

keywords: genome sequence, Bacteria, microaerophile, mesophilic, human pathogen

description: Streptococcus pneumoniae CCUG 33774 is a microaerophile, mesophilic human pathogen of the family Streptococcaceae.

NCBI tax id

  • NCBI tax id: 1313
  • Matching level: species

strain history

  • @ref: 5328
  • history: <- R. Hammann, Becton Dickinson, Heidelberg; <- ATCC; ATCC 6305 <- B.E. Eddy;

doi: 10.13145/bacdive14748.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus pneumoniae
  • full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Staphylococcus pneumoniae
    20215Micrococcus pneumoniae

@ref: 5328

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus pneumoniae

full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.378
69480100positive

colony morphology

  • @ref: 5328
  • type of hemolysis: alpha
  • hemolysis ability: 1
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5328COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
5328TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
5328positivegrowth37mesophilic
51727positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
5328microaerophile
51727microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.987

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838116634raffinose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan+builds acid from
6838117306maltose+builds acid from
683816731melezitose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
5328catalase+1.11.1.6
5328cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase+
68381pyrrolidonyl arylamidase+3.4.19.3
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
5328--+-+----++++----+-+++--+++-++/---
5328--+-+/-----++++----+-+-+--++------
5328--+-+----++++----+++++--++---+/---
5328--+-+----++++----+++++--++------

Safety information

risk assessment

  • @ref: 5328
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus pneumoniae ATCC 6305GCA_001999365scaffoldncbi1313
66792Streptococcus pneumoniae CCUG 33774GCA_001637465scaffoldncbi1313
66792Streptococcus pneumoniae strain ATCC 63051313.13970wgspatric1313
66792Streptococcus pneumoniae strain CCUG 337741313.9543wgspatric1313
66792Streptococcus pneumoniae CCUG 337742744054567draftimg1313

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno96.938no
gram-positiveyes93.514no
anaerobicno94.025yes
halophileyes78.381no
spore-formingno92.245no
glucose-utilyes86.313no
aerobicno96.4yes
thermophileno98.943no
glucose-fermentyes84.007no
motileno94.306no

External links

@ref: 5328

culture collection no.: CCUG 33774, CCM 4502, DSM 14378, ATCC 6305

straininfo link

  • @ref: 83865
  • straininfo: 8063

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology16822635Evaluation of 4 swab transport systems for the recovery of ATCC and clinical strains with characterized resistance mechanisms.Morosini MI, Loza E, Gutierrez O, Almaraz F, Baquero F, Canton RDiagn Microbiol Infect Dis10.1016/j.diagmicrobio.2006.02.0112006Bacteria, Aerobic/isolation & purification, Bacteria, Anaerobic/isolation & purification, Drug Resistance, Bacterial, Humans, *Microbial Viability, Microbiological Techniques/*methods, Specimen Handling/*methodsPhylogeny
Phylogeny20645834Evaluation of the antibacterial activity of the methylene chloride extract of Miconia ligustroides, isolated triterpene acids, and ursolic acid derivatives.Cunha WR, de Matos GX, Souza MG, Tozatti MG, Andrade e Silva ML, Martins CH, da Silva R, Da Silva Filho AAPharm Biol10.3109/138802009030626482010Anti-Bacterial Agents/analysis/chemistry/isolation & purification/*pharmacology, Brazil, Drug Discovery, Gram-Negative Bacteria/*drug effects, Gram-Positive Bacteria/*drug effects, Magnetic Resonance Spectroscopy, Medicine, Traditional, Melastomataceae/*chemistry, Methylene Chloride/chemistry, Microbial Sensitivity Tests, Molecular Structure, Oleanolic Acid/analogs & derivatives/analysis/chemistry/*pharmacology, Phytotherapy, Plant Components, Aerial/chemistry, Plant Extracts/chemistry/*pharmacology, Spectrometry, Mass, Electrospray Ionization, Triterpenes/analysis/chemistry/isolation & purification/*pharmacologyEnzymology
Genetics28385844Draft Genome Sequences of Six Strains of Streptococcus pneumoniae from Serotypes 5, 6A, 6B, 18C, 19A, and 23F.Jakobsson HE, Salva-Serra F, Thorell K, Karlsson R, Gonzales-Siles L, Boulund F, Engstrand L, Kristiansson E, Moore ERGenome Announc10.1128/genomeA.00125-172017

Reference

@idauthorscataloguedoi/urltitle
5328Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14378)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14378
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
51727Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 33774)https://www.ccug.se/strain?id=33774
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83865Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8063.1StrainInfo: A central database for resolving microbial strain identifiers