Strain identifier

BacDive ID: 14742

Type strain: No

Species: Streptococcus pneumoniae

Strain Designation: 665

Strain history: <- R. Hakenbeck, 665

NCBI tax ID(s): 1313 (species)

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General

@ref: 4515

BacDive-ID: 14742

DSM-Number: 11865

keywords: genome sequence, Bacteria, microaerophile, mesophilic, human pathogen

description: Streptococcus pneumoniae 665 is a microaerophile, mesophilic human pathogen that was isolated from clinical source.

NCBI tax id

  • NCBI tax id: 1313
  • Matching level: species

strain history

  • @ref: 4515
  • history: <- R. Hakenbeck, 665

doi: 10.13145/bacdive14742.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus pneumoniae
  • full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Staphylococcus pneumoniae
    20215Micrococcus pneumoniae

@ref: 4515

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus pneumoniae

full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901

strain designation: 665

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4515COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
4515TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92; with strain-specific modifications) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Choline 1.0 g/l Distilled water

culture temp

  • @ref: 4515
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 4515
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
4515--+-+----++++----+---+--++------
4515--+------+++/-+----+-------+------

Isolation, sampling and environmental information

isolation

  • @ref: 4515
  • sample type: clinical source
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

  • Cat1: #Infection
  • Cat2: #Medical environment
  • Cat3: #Clinic

Safety information

risk assessment

  • @ref: 4515
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus pneumoniae strain FDAARGOS_15081313.38070completepatric1313
66792Streptococcus pneumoniae strain FDAARGOS_15081313.39238completepatric1313
66792Streptococcus pneumoniae strain FDAARGOS_15081313.38496completepatric1313
66792Streptococcus pneumoniae strain FDAARGOS_15081313.39166completepatric1313

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno94.322no
gram-positiveyes93.393no
anaerobicno94.725no
halophileyes74.043no
spore-formingno92.22no
glucose-utilyes86.629no
flagellatedno95.996no
thermophileno99.007yes
aerobicno95.533no
glucose-fermentyes85.28no

External links

@ref: 4515

culture collection no.: DSM 11865

straininfo link

  • @ref: 83860
  • straininfo: 49191

Reference

@idauthorscataloguedoi/urltitle
4515Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11865)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11865
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68381Automatically annotated from API rID32STR
83860Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49191.1StrainInfo: A central database for resolving microbial strain identifiers