Strain identifier
BacDive ID: 14742
Type strain:
Species: Streptococcus pneumoniae
Strain Designation: 665
Strain history: <- R. Hakenbeck, 665
NCBI tax ID(s): 1313 (species)
General
@ref: 4515
BacDive-ID: 14742
DSM-Number: 11865
keywords: genome sequence, Bacteria, microaerophile, mesophilic, human pathogen
description: Streptococcus pneumoniae 665 is a microaerophile, mesophilic human pathogen that was isolated from clinical source.
NCBI tax id
- NCBI tax id: 1313
- Matching level: species
strain history
- @ref: 4515
- history: <- R. Hakenbeck, 665
doi: 10.13145/bacdive14742.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus pneumoniae
- full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980)
synonyms
@ref synonym 20215 Staphylococcus pneumoniae 20215 Micrococcus pneumoniae
@ref: 4515
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus pneumoniae
full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901
strain designation: 665
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4515 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
4515 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92; with strain-specific modifications) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Choline 1.0 g/l Distilled water |
culture temp
- @ref: 4515
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4515
- oxygen tolerance: microaerophile
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68381 | 29016 | arginine | - | hydrolysis |
68381 | 16988 | D-ribose | - | builds acid from |
68381 | 16899 | D-mannitol | - | builds acid from |
68381 | 30911 | sorbitol | - | builds acid from |
68381 | 17716 | lactose | + | builds acid from |
68381 | 27082 | trehalose | + | builds acid from |
68381 | 17992 | sucrose | + | builds acid from |
68381 | 30849 | L-arabinose | - | builds acid from |
68381 | 18333 | D-arabitol | - | builds acid from |
68381 | 40585 | alpha-cyclodextrin | - | builds acid from |
68381 | 606565 | hippurate | - | hydrolysis |
68381 | 28087 | glycogen | - | builds acid from |
68381 | 17306 | maltose | + | builds acid from |
68381 | 28053 | melibiose | - | builds acid from |
68381 | 6731 | melezitose | - | builds acid from |
68381 | 320055 | methyl beta-D-glucopyranoside | - | builds acid from |
68381 | 16443 | D-tagatose | - | builds acid from |
68381 | 16199 | urea | - | hydrolysis |
metabolite production
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- production: no
metabolite tests
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68381 | urease | - | 3.5.1.5 |
68381 | beta-mannosidase | - | 3.2.1.25 |
68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68381 | beta-galactosidase | - | 3.2.1.23 |
68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | |
68381 | alkaline phosphatase | - | 3.1.3.1 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | - | 3.2.1.21 |
68381 | arginine dihydrolase | - | 3.5.3.6 |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
4515 | - | - | + | - | + | - | - | - | - | + | + | + | + | - | - | - | - | + | - | - | - | + | - | - | + | + | - | - | - | - | - | - |
4515 | - | - | + | - | - | - | - | - | - | + | + | +/- | + | - | - | - | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 4515
- sample type: clinical source
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
- Cat1: #Infection
- Cat2: #Medical environment
- Cat3: #Clinic
Safety information
risk assessment
- @ref: 4515
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptococcus pneumoniae strain FDAARGOS_1508 | 1313.38070 | complete | patric | 1313 |
66792 | Streptococcus pneumoniae strain FDAARGOS_1508 | 1313.39238 | complete | patric | 1313 |
66792 | Streptococcus pneumoniae strain FDAARGOS_1508 | 1313.38496 | complete | patric | 1313 |
66792 | Streptococcus pneumoniae strain FDAARGOS_1508 | 1313.39166 | complete | patric | 1313 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 94.322 | no |
gram-positive | yes | 93.393 | no |
anaerobic | no | 94.725 | no |
halophile | yes | 74.043 | no |
spore-forming | no | 92.22 | no |
glucose-util | yes | 86.629 | no |
flagellated | no | 95.996 | no |
thermophile | no | 99.007 | yes |
aerobic | no | 95.533 | no |
glucose-ferment | yes | 85.28 | no |
External links
@ref: 4515
culture collection no.: DSM 11865
straininfo link
- @ref: 83860
- straininfo: 49191
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
4515 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11865) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11865 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68381 | Automatically annotated from API rID32STR | |||
83860 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49191.1 | StrainInfo: A central database for resolving microbial strain identifiers |