Strain identifier

BacDive ID: 147413

Type strain: No

Species: Bordetella parapertussis

NCBI tax ID(s): 519 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 51585

BacDive-ID: 147413

keywords: genome sequence, Bacteria, motile

description: Bordetella parapertussis CCUG 33551 is a motile bacterium that was isolated from Cough plate.

NCBI tax id

  • NCBI tax id: 519
  • Matching level: species

doi: 10.13145/bacdive147413.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Bordetella
  • species: Bordetella parapertussis
  • full scientific name: Bordetella parapertussis (Eldering and Kendrick 1938) Moreno-López 1952 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus parapertussis

@ref: 51585

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Bordetella

species: Bordetella parapertussis

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes94.846
6948099.993negative

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.961
69481no100

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    51585C14:04.614
    51585C15:00.715
    51585C16:041.216
    51585C17:02.217
    51585C18:04.618
    51585C10:0 3OH1.811.423
    51585C14:0 3OH/C16:1 ISO I415.485
    51585C16:1 ω7c12.215.819
    51585C17:0 CYCLO26.516.888
    51585C18:1 ω9c1.517.769
    51585C18:2 ω6,9c/C18:0 ANTE0.817.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

Isolation, sampling and environmental information

isolation

  • @ref: 51585
  • sample type: Cough plate

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Laboratory
  • Cat3: #Defined media

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bordetella parapertussis NCTC10853GCA_900445795contigncbi519
66792Bordetella parapertussis strain NCTC10853519.17wgspatric519
66792Bordetella parapertussis NCTC 108532811995280draftimg519

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.156no
anaerobicno99.037no
halophileno81.885no
spore-formingno93.899no
glucose-utilno82.67no
aerobicyes87.565no
thermophileno99.457no
motileyes88.086no
flagellatedyes51.468no
glucose-fermentno90.69no

External links

@ref: 51585

culture collection no.: CCUG 33551, ATCC 15237, NCTC 10853

straininfo link

  • @ref: 102125
  • straininfo: 1319

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
51585Curators of the CCUGhttps://www.ccug.se/strain?id=33551Culture Collection University of Gothenburg (CCUG) (CCUG 33551)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
102125Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID1319.1