Strain identifier
version 8.1 (current version)
General
@ref: 51585
BacDive-ID: 147413
keywords: genome sequence, Bacteria, motile
description: Bordetella parapertussis CCUG 33551 is a motile bacterium that was isolated from Cough plate.
NCBI tax id
- NCBI tax id: 519
- Matching level: species
doi: 10.13145/bacdive147413.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Bordetella
- species: Bordetella parapertussis
- full scientific name: Bordetella parapertussis (Eldering and Kendrick 1938) Moreno-López 1952 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus parapertussis
@ref: 51585
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Bordetella
species: Bordetella parapertussis
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 94.846 | |
69480 | 99.993 | negative |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.961 |
69481 | no | 100 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 51585 C14:0 4.6 14 51585 C15:0 0.7 15 51585 C16:0 41.2 16 51585 C17:0 2.2 17 51585 C18:0 4.6 18 51585 C10:0 3OH 1.8 11.423 51585 C14:0 3OH/C16:1 ISO I 4 15.485 51585 C16:1 ω7c 12.2 15.819 51585 C17:0 CYCLO 26.5 16.888 51585 C18:1 ω9c 1.5 17.769 51585 C18:2 ω6,9c/C18:0 ANTE 0.8 17.724 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
- @ref: 51585
- sample type: Cough plate
isolation source categories
- Cat1: #Engineered
- Cat2: #Laboratory
- Cat3: #Defined media
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bordetella parapertussis NCTC10853 | GCA_900445795 | contig | ncbi | 519 |
66792 | Bordetella parapertussis strain NCTC10853 | 519.17 | wgs | patric | 519 |
66792 | Bordetella parapertussis NCTC 10853 | 2811995280 | draft | img | 519 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | no | 98.156 | no |
anaerobic | no | 99.037 | no |
halophile | no | 81.885 | no |
spore-forming | no | 93.899 | no |
glucose-util | no | 82.67 | no |
aerobic | yes | 87.565 | no |
thermophile | no | 99.457 | no |
motile | yes | 88.086 | no |
flagellated | yes | 51.468 | no |
glucose-ferment | no | 90.69 | no |
External links
@ref: 51585
culture collection no.: CCUG 33551, ATCC 15237, NCTC 10853
straininfo link
- @ref: 102125
- straininfo: 1319
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
51585 | Curators of the CCUG | https://www.ccug.se/strain?id=33551 | Culture Collection University of Gothenburg (CCUG) (CCUG 33551) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
102125 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID1319.1 |