Strain identifier

BacDive ID: 14740

Type strain: Yes

Species: Streptococcus oralis

Strain Designation: LVG/l, PB182, PB 182

Strain history: CIP <- 1987, NCTC <- P.H.A. Sneath: strain PB 182 <- J. Carlsson: strain LVG/1, Group IA

NCBI tax ID(s): 1303 (species)

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General

@ref: 8975

BacDive-ID: 14740

DSM-Number: 20627

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, coccus-shaped

description: Streptococcus oralis LVG/l is a microaerophile, mesophilic, coccus-shaped bacterium that was isolated from human mouth.

NCBI tax id

  • NCBI tax id: 1303
  • Matching level: species

strain history

@refhistory
8975<- NCTC; NCTC 11427 <- P. H. A. Sneath; PB182 <- J. Carlson; LVG/l
67770CCUG 13229 <-- NCTC 11427 <-- P. H. A. Sneath PB182 <-- J. Carlsson LVG/1.
67771<- DSM <- NCTC <- PHA Sneath, PB182 <- J Carlsson, LVG/1(GroupIA)
121429CIP <- 1987, NCTC <- P.H.A. Sneath: strain PB 182 <- J. Carlsson: strain LVG/1, Group IA

doi: 10.13145/bacdive14740.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus oralis
  • full scientific name: Streptococcus oralis Bridge and Sneath 1982

@ref: 8975

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus oralis subsp. oralis

full scientific name: Streptococcus oralis subsp. oralis (Bridge and Sneath 1982) Jensen et al. 2016

strain designation: LVG/l, PB182, PB 182

type strain: yes

Morphology

cell morphology

@refcell shapemotilitygram stainconfidence
67771coccus-shapedno
67771positive
69480no95.462
69480positive100
121429coccus-shapednopositive

colony morphology

@reftype of hemolysishemolysis abilityincubation period
8975alpha11-2 days
121429

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8975COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8975TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
42198MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121429CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
8975positivegrowth37mesophilic
42198positivegrowth37mesophilic
67770positivegrowth37mesophilic
67771positivegrowth37mesophilic
121429positivegrowth30mesophilic
121429nogrowth10psychrophilic
121429nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8975microaerophile
67771microaerophile
121429facultative anaerobe

spore formation

@refspore formationconfidence
67771no
69481no100
69480no99.972

halophily

  • @ref: 121429
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

murein

  • @ref: 8975
  • murein short key: A11
  • type: A1alpha L-Lys-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12142917632nitrate-reduction
12142916301nitrite-reduction
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838127082trehalose+builds acid from
6838116634raffinose-builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116199urea-hydrolysis

antibiotic resistance

  • @ref: 121429
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
8975catalase-1.11.1.6
8975cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase+
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
121429oxidase-
121429alcohol dehydrogenase-1.1.1.1
121429catalase-1.11.1.6
121429lysine decarboxylase-4.1.1.18
121429ornithine decarboxylase-4.1.1.17

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
8975--+--+---++-+----+---+--++---+/---
8975--+--+----+-+/-----+---+----------
8975--+--+---++-+----+--+/-+--++------
8975--+--+---++-+----+---+--++------
8975--+--+---++-+----+---+--++/----+/---

Isolation, sampling and environmental information

isolation

@refsample type
8975human mouth
67770Human mouth
67771From Human mouth
121429Human, Mouth

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Mouth

taxonmaps

  • @ref: 69479
  • File name: preview.99_4.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_4;97_4;98_4;99_4&stattab=map
  • Last taxonomy: Streptococcus
  • 16S sequence: LC383838
  • Sequence Identity:
  • Total samples: 59292
  • soil counts: 819
  • aquatic counts: 1515
  • animal counts: 56551
  • plant counts: 407

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
89752Risk group (German classification)
1214292Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus oralis 16S ribosomal RNA gene, complete sequenceAF0039321460ena655813
20218Streptococcus oralis strain ATCC 35037 16S-23S ribosomal RNA intergenic spacer, complete sequenceAY347551246ena655813
20218Streptococcus oralis strain ATCC 35037 16S ribosomal RNA gene, partial sequenceEU1567681269ena655813
20218Streptococcus oralis strain KCTC 13048 16S ribosomal RNA gene, partial sequenceGU0453771421ena1303
20218Streptococcus oralis strain KCTC 13048 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceHM241936458ena1303
20218Streptococcus oralis ATCC 35037 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceJN181389460ena655813
20218S.oralis 16S rRNAX583081333ena655813
8975Streptococcus oralis strain ATCC 35037 16S small subunit ribosomal RNA gene, partial sequenceAY4856021471ena655813
67770Streptococcus oralis subsp. oralis JCM 12997 gene for 16S ribosomal RNA, partial sequenceLC3838381487ena1891914
67771Streptococcus oralis strain CCUG 24891 16S ribosomal RNA gene, partial sequenceDQ3031901472ena1303

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus oralis ATCC 35037 NCTC 11427GCA_900637025completencbi655813
66792Streptococcus oralis CCUG 24891GCA_001639375scaffoldncbi1303
66792Streptococcus oralis CCUG 13229GCA_002014885scaffoldncbi1303
66792Streptococcus oralis ATCC 35037655813.3wgspatric655813
66792Streptococcus oralis ATCC 35037 (Prj:53033)655813.4wgspatric655813
66792Streptococcus oralis ATCC 35037 strain NCTC11427 strain NCTC 11427655813.19completepatric655813
66792Streptococcus oralis strain CCUG 132291303.137wgspatric1303
66792Streptococcus oralis strain CCUG 248911303.89wgspatric1303
66792Streptococcus oralis strain FDAARGOS_10201303.920completepatric1303
66792Streptococcus oralis ATCC 35037648276739draftimg655813
66792Streptococcus oralis ATCC 35037 NCTC 114272872627392completeimg655813
66792Streptococcus oralis CCUG 248912744054846draftimg1303
66792Streptococcus oralis SK23, ATCC 35037647000325draftimg655813
67771Streptococcus oralis ATCC 35037GCA_000164095scaffoldncbi655813
66792Streptococcus oralis ATCC 35037GCA_000148565contigncbi655813

GC content

@refGC-content
897539.9
6777041

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno96.613yes
gram-positiveyes93.807yes
anaerobicno92.999yes
aerobicno97.393no
halophileyes75.062no
spore-formingno93.09yes
thermophileno99.37yes
glucose-utilyes85.664no
motileno95.415yes
glucose-fermentyes86.425no

External links

@ref: 8975

culture collection no.: DSM 20627, ATCC 35037, KCTC 13048, NCTC 11427, NBRC 113011, JCM 12997, CCUG 13229, CCUG 24891, CCUG 25610, CECT 907, CIP 102922, LMG 14532, KCTC 3285, NCDO 2680

straininfo link

  • @ref: 83858
  • straininfo: 8045

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology2612885Infection of Streptococcus oralis NCTC 11427 by pneumococcal phages.Ronda C, Garcia JL, Lopez RFEMS Microbiol Lett10.1016/0378-1097(89)90389-31989Bacteriolysis, Bacteriophages/genetics/*physiology, Choline/pharmacology, DNA, Viral/genetics, Kinetics, Streptococcus/genetics/*physiology, *Transfection, Virus Replication
Enzymology2838503Construction of a DNA probe for the specific identification of Streptococcus oralis.Schmidhuber S, Ludwig W, Schleifer KHJ Clin Microbiol10.1128/jcm.26.5.1042-1044.19881988Cloning, Molecular, DNA Restriction Enzymes, DNA, Bacterial/*genetics, *Deoxyribonucleases, Type II Site-Specific, Nucleic Acid Hybridization, Streptococcus/genetics/*isolation & purificationPhylogeny
Metabolism3241622Characterization of genetic transformation in Streptococcus oralis NCTC 11427: expression of the pneumococcal amidase in S. oralis using a new shuttle vector.Ronda C, Garcia JL, Lopez RMol Gen Genet10.1007/BF003313021988Amidohydrolases/genetics, Cell Wall/metabolism, Choline/metabolism, Genes, Bacterial, Genetic Vectors, Plasmids, Streptococcus/*genetics/growth & development/metabolism, Streptococcus pneumoniae/genetics/metabolism, *Transformation, Genetic
Metabolism8449879Possible role of a choline-containing teichoic acid in the maintenance of normal cell shape and physiology in Streptococcus oralis.Horne DS, Tomasz AJ Bacteriol10.1128/jb.175.6.1717-1722.19931993Choline/*metabolism, Chromatography, Thin Layer, Culture Media, Kinetics, Magnetic Resonance Spectroscopy, Streptococcus/*cytology/growth & development/metabolism, Teichoic Acids/*metabolismCultivation
Enzymology9079939Identification and characterization of IS1381, a new insertion sequence in Streptococcus pneumoniae.Sanchez-Beato AR, Garcia E, Lopez R, Garcia JLJ Bacteriol10.1128/jb.179.7.2459-2463.19971997Amino Acid Sequence, Base Sequence, Blotting, Southern, Cloning, Molecular, *DNA Transposable Elements, DNA, Bacterial/*genetics, Molecular Sequence Data, Open Reading Frames, Repetitive Sequences, Nucleic Acid, Restriction Mapping, Sequence Alignment, Sequence Homology, Amino Acid, Serotyping, Species Specificity, Streptococcus pneumoniae/*geneticsGenetics
Metabolism11169141Utilization and acid production of beta-galactosyllactose by oral streptococci and human dental plaque.Hata S, Hata H, Kanou N, Saito T, Kamiyama K, Mayanagi HOral Microbiol Immunol10.1034/j.1399-302x.2001.160110.x2001Acids/metabolism, Cariogenic Agents/metabolism, Dental Plaque/*microbiology, Galactose/metabolism, Galactosides/*metabolism, Humans, Lactose/*metabolism, Mouth/*microbiology, Streptococcus/classification/growth & development/*metabolism, Streptococcus oralis/growth & development/metabolism, Streptococcus sanguis/growth & development/metabolism, Trisaccharides/metabolismPathogenicity
Pathogenicity17634727Inhibition of bacterial adherence to saliva-coated through plant lectins.Oliveira MR, Napimoga MH, Cogo K, Goncalves RB, Macedo ML, Freire MG, Groppo FCJ Oral Sci10.2334/josnusd.49.1412007Bacterial Adhesion/*drug effects, Biofilms/*drug effects, Colony Count, Microbial, Dental Pellicle/*physiology, Humans, Microbial Sensitivity Tests, Plant Lectins/*pharmacology, Streptococcus/drug effects/*physiology
Biotechnology18077037Lactobacillus fermentum ACA-DC 179 displays probiotic potential in vitro and protects against trinitrobenzene sulfonic acid (TNBS)-induced colitis and Salmonella infection in murine models.Zoumpopoulou G, Foligne B, Christodoulou K, Grangette C, Pot B, Tsakalidou EInt J Food Microbiol10.1016/j.ijfoodmicro.2007.10.0132007Animals, *Antibiosis, Cell-Free System, Colitis/chemically induced/microbiology/*prevention & control, Colony Count, Microbial, Cytokines/biosynthesis, Disease Models, Animal, Female, *Food Microbiology, Humans, Hydrogen-Ion Concentration, Lactobacillus fermentum/*physiology, Lactobacillus plantarum/growth & development/physiology, Leukocytes, Mononuclear, Mice, Mice, Inbred BALB C, *Probiotics, Salmonella Infections/microbiology/*prevention & control, Streptococcus/growth & development/physiology, Trinitrobenzenesulfonic Acid/toxicityPathogenicity
Metabolism21966432Mitis group streptococci express variable pilus islet 2 pili.Zahner D, Gandhi AR, Yi H, Stephens DSPLoS One10.1371/journal.pone.00251242011Bacterial Proteins/genetics/*metabolism, Fimbriae, Bacterial/genetics/*metabolism, Molecular Sequence Data, Polymerase Chain Reaction, Streptococcus mitis/genetics/*metabolism, Streptococcus oralis/genetics/*metabolism, Streptococcus sanguis/genetics/*metabolismGenetics
Pathogenicity22879961Inhibitory effect on in vitro Streptococcus oralis biofilm of a soda-lime glass containing silver nanoparticles coating on titanium alloy.Cabal B, Cafini F, Esteban-Tejeda L, Alou L, Bartolome JF, Sevillano D, Lopez-Piriz R, Torrecillas R, Moya JSPLoS One10.1371/journal.pone.00423932012Alloys, Bacterial Adhesion/drug effects, Biofilms/*drug effects, Calcium Compounds/*pharmacology, Gentian Violet, Glass/*chemistry, Humans, Metal Nanoparticles/*chemistry/ultrastructure, Oxides/*pharmacology, Plankton/drug effects, Silver/*pharmacology, Sodium Hydroxide/*pharmacology, Staining and Labeling, Streptococcus oralis/drug effects/*physiology/ultrastructure, Surface Properties, Temperature, Titanium/*pharmacology
Pathogenicity24610586Effective oral health in infective endocarditis: efficacy of high-street mouthwashes against the viridans group streptococci.Elshibly A, Coulter WA, Millar BC, Prendergast BD, Thornhill M, Irwin C, Goldsmith CE, Moore JEJ Investig Clin Dent10.1111/jicd.120882014Anti-Infective Agents, Local/*pharmacology, Bacteriological Techniques, Cetylpyridinium/pharmacology, Chlorhexidine/analogs & derivatives/pharmacology, Drug Combinations, Endocarditis, Bacterial/*microbiology, Humans, Mouth/*microbiology, Mouthwashes/*pharmacology, Oral Health, Salicylates/pharmacology, Streptococcal Infections/*microbiology, Streptococcus/drug effects, Streptococcus gordonii/drug effects, Streptococcus intermedius/drug effects, Streptococcus mutans/drug effects, Streptococcus oralis/drug effects, Streptococcus pneumoniae/drug effects, Terpenes/pharmacology, Viridans Streptococci/*drug effects
Phylogeny26651833Streptococcus oricebi sp. nov., isolated from the oral cavity of tufted capuchin.Saito M, Shinozaki-Kuwahara N, Hirasawa M, Takada KInt J Syst Evol Microbiol10.1099/ijsem.0.0008342015Animals, Bacterial Typing Techniques, Base Composition, Cebus/*microbiology, DNA, Bacterial/genetics, DNA-Directed RNA Polymerases/genetics, Genes, Bacterial, Mouth/*microbiology, Philippines, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptococcus/*classification/genetics/isolation & purificationTranscriptome
Transcriptome28681361Top-Down LESA Mass Spectrometry Protein Analysis of Gram-Positive and Gram-Negative Bacteria.Kocurek KI, Stones L, Bunch J, May RC, Cooper HJJ Am Soc Mass Spectrom10.1007/s13361-017-1718-82017Bacterial Proteins/*analysis, Escherichia coli/chemistry, Gram-Negative Bacteria/*chemistry, Gram-Positive Bacteria/*chemistry, Liquid-Liquid Extraction/methods, Refrigeration, Sequence Analysis, Protein/methods, Staphylococcus aureus/chemistry/isolation & purification, Streptococcus/chemistry/isolation & purification, Tandem Mass Spectrometry/*methodsEnzymology
32665810The effective and safe method for preventing and treating bacteria-induced dental diseases by herbal plants and a recombinant peptide.Tanhaieian A, Pourgonabadi S, Akbari M, Mohammadipour HSJ Clin Exp Dent10.4317/jced.557172020
33183206A New Approach Against Some Oral Pathogenic Bacteria Using a Chimeric Antimicrobial Peptide Derived from the Camel Milk; Lactoferrampin - Lactoferricin Chimer.Mohammadipour HS, Akbari M, Tanhaeian A, Pourgonabadi S, Sekandari S, Karimian ECurr Drug Discov Technol10.2174/15701638179992011111935072021Animals, Anti-Bacterial Agents/toxicity, Antimicrobial Peptides, *Camelus, *Dental Caries/drug therapy/prevention & control, Lactoferrin, Microbial Sensitivity Tests, Milk, Peptide Fragments, Streptococcus mutans

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8975Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20627)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20627
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42198Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14662
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68381Automatically annotated from API rID32STR
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83858Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8045.1StrainInfo: A central database for resolving microbial strain identifiers
121429Curators of the CIPCollection of Institut Pasteur (CIP 102922)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102922