Strain identifier

BacDive ID: 14737

Type strain: No

Species: Streptococcus oralis

Strain Designation: 25826

Strain history: <- Kiel, 25826 (Streptococcus sanguis biotype II)

NCBI tax ID(s): 1303 (species)

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General

@ref: 8496

BacDive-ID: 14737

DSM-Number: 20066

keywords: genome sequence, Bacteria, mesophilic

description: Streptococcus oralis 25826 is a mesophilic bacterium that was isolated from human throat.

NCBI tax id

  • NCBI tax id: 1303
  • Matching level: species

strain history

  • @ref: 8496
  • history: <- Kiel, 25826 (Streptococcus sanguis biotype II)

doi: 10.13145/bacdive14737.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus oralis
  • full scientific name: Streptococcus oralis Bridge and Sneath 1982

@ref: 8496

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus oralis

full scientific name: Streptococcus oralis Bridge and Sneath 1982 emend. Kilpper-Bälz et al. 1985 emend. Kilian et al. 1989 emend. Jensen et al. 2016

strain designation: 25826

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.93
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8496COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8496TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 8496
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.966

murein

  • @ref: 8496
  • murein short key: A11
  • type: A1alpha L-Lys-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838116634raffinose-builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANUREbeta NAG
8496--+-++---++-+----++-+--++------
8496--+-------------++--+-----------

Isolation, sampling and environmental information

isolation

  • @ref: 8496
  • sample type: human throat

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Throat

Safety information

risk assessment

  • @ref: 8496
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Streptococcus oralis strain FDAARGOS_1075
  • accession: 1303.921
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 1303

GC content

  • @ref: 8496
  • GC-content: 39.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.944no
gram-positiveyes94.019no
anaerobicno94.882no
halophileyes74.732no
spore-formingno94.006no
thermophileno99.656yes
glucose-utilyes84.198no
aerobicno97no
glucose-fermentyes86.579no
flagellatedno95.991no

External links

@ref: 8496

culture collection no.: DSM 20066

straininfo link

  • @ref: 83855
  • straininfo: 49576

Reference

@idauthorscataloguedoi/urltitle
8496Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20066)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20066
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83855Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49576.1StrainInfo: A central database for resolving microbial strain identifiers