Strain identifier
BacDive ID: 147362
Type strain: 
Species: Francisella tularensis subsp. novicida
NCBI tax ID(s): 264 (subspecies)
version 8.1 (current version)
General
@ref: 51526
BacDive-ID: 147362
keywords: genome sequence, Bacteria
description: Francisella tularensis subsp. novicida CCUG 33449 is a bacterium that was isolated from Water.
NCBI tax id
- NCBI tax id: 264
- Matching level: subspecies
doi: 10.13145/bacdive147362.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Beggiatoales
- family: Francisellaceae
- genus: Francisella
- species: Francisella tularensis subsp. novicida
- full scientific name: Francisella tularensis subsp. novicida (Larson et al. 1955) Huber et al. 2010
synonyms
@ref synonym 20215 Pasteurella novicida 20215 Francisella novicida
@ref: 51526
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Thiotrichales
family: Francisellaceae
genus: Francisella
species: Francisella tularensis subsp. novicida
type strain: yes
Isolation, sampling and environmental information
isolation
- @ref: 51526
- sample type: Water
- sampling date: 1951
- geographic location: Utah
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Francisella tularensis ATCC 15482 | GCA_009815755 | contig | ncbi | 263 |
| 66792 | Francisella tularensis strain ATCC 15482 | 263.357 | wgs | patric | 263 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 88.653 | no |
| gram-positive | no | 96.089 | no |
| anaerobic | no | 96.599 | no |
| aerobic | no | 57.338 | no |
| halophile | no | 76.198 | no |
| spore-forming | no | 97.1 | no |
| glucose-util | yes | 78.255 | no |
| flagellated | no | 96.271 | no |
| thermophile | no | 98.718 | no |
| glucose-ferment | no | 72.718 | no |
External links
@ref: 51526
culture collection no.: CCUG 33449, CAPM 6041, ATCC 15482, CIP 56.12
straininfo link
- @ref: 102084
- straininfo: 389304
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19783615 | Description of Francisella hispaniensis sp. nov., isolated from human blood, reclassification of Francisella novicida (Larson et al. 1955) Olsufiev et al. 1959 as Francisella tularensis subsp. novicida comb. nov. and emended description of the genus Francisella. | Huber B, Escudero R, Busse HJ, Seibold E, Scholz HC, Anda P, Kampfer P, Splettstoesser WD | Int J Syst Evol Microbiol | 10.1099/ijs.0.015941-0 | 2009 | Blood/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Francisella/*classification/genetics/*isolation & purification/metabolism, Gram-Negative Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics | Metabolism |
| Phylogeny | 26747442 | Reclassification of Wolbachia persica as Francisella persica comb. nov. and emended description of the family Francisellaceae. | Larson MA, Nalbantoglu U, Sayood K, Zentz EB, Cer RZ, Iwen PC, Francesconi SC, Bishop-Lilly KA, Mokashi VP, Sjostedt A, Hinrichs SH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000855 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Francisella/*classification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Wolbachia/classification | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 51526 | Curators of the CCUG | https://www.ccug.se/strain?id=33449 | Culture Collection University of Gothenburg (CCUG) (CCUG 33449) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 102084 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID389304.1 |