Strain identifier

BacDive ID: 14733

Type strain: Yes

Species: Streptococcus macacae

Strain Designation: 25-1

Strain history: CIP <- 1987, NCTC <- D. Beighton, Royal Coll. Surg., Orpington, UK: strain 25-1

NCBI tax ID(s): 764298 (strain), 1339 (species)

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General

@ref: 9034

BacDive-ID: 14733

DSM-Number: 20724

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Streptococcus macacae 25-1 is a microaerophile, mesophilic bacterium that was isolated from dental plaque of monkey.

NCBI tax id

NCBI tax idMatching level
764298strain
1339species

strain history

@refhistory
9034<- NCTC <- D. Beighton, 25-1
120729CIP <- 1987, NCTC <- D. Beighton, Royal Coll. Surg., Orpington, UK: strain 25-1

doi: 10.13145/bacdive14733.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus macacae
  • full scientific name: Streptococcus macacae Beighton et al. 1984

@ref: 9034

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus macacae

full scientific name: Streptococcus macacae Beighton et al. 1984

strain designation: 25-1

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no96.458
69480100positive
120729nopositiverod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9034COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
9034TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
40478MEDIUM 38 - for Streptococcus and Gemella HaemolysansyesDistilled water make up to (1000.000 ml);Horse serum (200.000 ml);Glucose (10.000 g);Brain heart infusion agar (52.000 g)
120729CIP Medium 38yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=38
120729CIP Medium 253yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=253

culture temp

@refgrowthtypetemperaturerange
9034positivegrowth37mesophilic
40478positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
9034microaerophile
120729facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.988

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
120729nitrate-reduction17632
120729nitrite-reduction16301
68381arginine-hydrolysis29016
68381D-ribose-builds acid from16988
68381D-mannitol-builds acid from16899
68381sorbitol-builds acid from30911
68381lactose-builds acid from17716
68381trehalose+builds acid from27082
68381raffinose-builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate-hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan-builds acid from27941
68381maltose+builds acid from17306
68381melibiose-builds acid from28053
68381melezitose-builds acid from6731
68381methyl beta-D-glucopyranoside-builds acid from320055
68381D-tagatose-builds acid from16443
68381urea-hydrolysis16199

metabolite production

@refChebi-IDmetaboliteproduction
12072935581indoleno
6838115688acetoinyes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
120729oxidase-
120729catalase-1.11.1.6
120729urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120729---------++-+----++/----+/-+/-+/-+++--++---+/-------------+/-

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
9034-+--------+-+---+--------+------

Isolation, sampling and environmental information

isolation

@refsample type
9034dental plaque of monkey
48872Monkey dental plaque
120729Animal, Monkey: Macaca fascicularis, dental plaque

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Primates
#Host Body-Site#Oral cavity and airways#Plaque
#Host Body-Site#Oral cavity and airways#Tooth

taxonmaps

  • @ref: 69479
  • File name: preview.99_4352.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17185;96_2182;97_2640;98_3273;99_4352&stattab=map
  • Last taxonomy: Streptococcus macacae subclade
  • 16S sequence: AJ420199
  • Sequence Identity:
  • Total samples: 1650
  • soil counts: 62
  • aquatic counts: 98
  • animal counts: 1470
  • plant counts: 20

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
90341Risk group (German classification)
1207292Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus macacae strain ATCC 35911 16S ribosomal RNA gene, complete sequenceAY1883511547ena764298
20218Streptococcus macacae partial 16S rRNA gene, strain NCTC11558AJ4201991435ena764298
20218S.macacae 16S rRNAX583021332ena764298

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus macacae NCTC 11558GCA_900459485contigncbi764298
66792Streptococcus macacae NCTC 11558GCA_000187995contigncbi764298
66792Streptococcus macacae NCTC 11558764298.7wgspatric764298
66792Streptococcus macacae NCTC 11558764298.3wgspatric764298
66792Streptococcus macacae NCTC 115582512047074draftimg764298
66792Streptococcus macacae NCTC 115582917313891draftimg764298

GC content

  • @ref: 9034
  • GC-content: 36.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno96.437no
flagellatedno96.781no
gram-positiveyes94.898no
anaerobicno96.179yes
halophileyes72.718no
spore-formingno94.838no
glucose-utilyes88.208no
aerobicno97.713yes
thermophileno99.346yes
glucose-fermentyes84.996no

External links

@ref: 9034

culture collection no.: CCUG 27653, DSM 20724, ATCC 35911, NCTC 11558, CIP 102912

straininfo link

  • @ref: 83851
  • straininfo: 8037

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9034Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20724)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20724
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40478Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14651
48872Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 27653)https://www.ccug.se/strain?id=27653
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83851Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8037.1StrainInfo: A central database for resolving microbial strain identifiers
120729Curators of the CIPCollection of Institut Pasteur (CIP 102912)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102912