Strain identifier

BacDive ID: 147329

Type strain: No

Species: Vibrio cholerae

NCBI tax ID(s): 666 (species)

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General

@ref: 51486

BacDive-ID: 147329

keywords: Bacteria

description: Vibrio cholerae CCUG 33379 is a bacterium that was isolated from Human ear,13-yr-old swimming pool male patient.

NCBI tax id

  • NCBI tax id: 666
  • Matching level: species

doi: 10.13145/bacdive147329.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio cholerae
  • full scientific name: Vibrio cholerae Pacini 1854 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Vibrio albensis

@ref: 51486

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio cholerae

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis
6837418257ornithine+degradation
6837429016arginine-hydrolysis
6837425094lysine-degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol-builds acid from
6837417306maltose-builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan+energy source
6837417634D-glucose-builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose-builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose-builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleyes
6836815688acetoinyes
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6837435581indole+
6836815688acetoin+
6836835581indole+

enzymes

@refvalueactivityec
68374L-aspartate arylamidase+3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase+
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase+4.1.1.17
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    51486C14:04.214
    51486C15:00.515
    51486C16:011.516
    51486C17:00.317
    51486C18:00.518
    51486C13:0 ISO 2OH0.413.814
    51486C16:0 iso2.715.626
    51486C16:1 ω7c19.115.819
    51486C16:1 ω7c/C15:0 ISO 2OH4.415.85
    51486C16:1 ω9c0.615.774
    51486C17:1 ω8c0.416.792
    51486C18:0 ISO0.517.632
    51486C18:1 ω6c1.817.858
    51486C18:1 ω7c /12t/9t13.117.824
    51486C18:1 ω9c0.517.769
    51486C19:0 CYCLO ω9c0.418.87
    51486Unidentified0.39.236
    51486Unidentified0.510.651
    51486Unidentified3.612.678
    51486Unidentified0.414.136
    51486Unidentified2.614.282
    51486Unidentified1.715.93
    51486Unidentified6.916.304
    51486Unidentified0.418.082
    51486Unidentified8.818.146
    51486unknown 12.4860.412.486
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
51486+-+++---+++++---+---+

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
51486+------+-+------+-+------------+

Isolation, sampling and environmental information

isolation

  • @ref: 51486
  • sample type: Human ear,13-yr-old swimming pool male patient
  • sampling date: 1994-09-19
  • geographic location: Uppsala
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Child
#Host Body-Site#Organ#Ear
#Infection#Patient
#Host#Human#Male

External links

@ref: 51486

culture collection no.: CCUG 33379

straininfo link

  • @ref: 102054
  • straininfo: 58234

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
51486Curators of the CCUGhttps://www.ccug.se/strain?id=33379Culture Collection University of Gothenburg (CCUG) (CCUG 33379)
68368Automatically annotated from API 20E
68374Automatically annotated from API ID32E
102054Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID58234.1