Strain identifier

BacDive ID: 14720

Type strain: Yes

Species: Streptococcus canis

Strain Designation: STR-T1

Strain history: CIP <- 1988, DSM <- R. Kilpper-Bältz <- J. Hommez: strain STR-T1

NCBI tax ID(s): 1329 (species)

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General

@ref: 9025

BacDive-ID: 14720

DSM-Number: 20715

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped

description: Streptococcus canis STR-T1 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from bovine mastitis.

NCBI tax id

  • NCBI tax id: 1329
  • Matching level: species

strain history

@refhistory
9025<- R. Kilpper-Bälz <- J. Hommez, STR-T1
117144CIP <- 1988, DSM <- R. Kilpper-Bältz <- J. Hommez: strain STR-T1

doi: 10.13145/bacdive14720.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus canis
  • full scientific name: Streptococcus canis Devriese et al. 1986

@ref: 9025

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus canis

full scientific name: Streptococcus canis Devriese et al. 1986

strain designation: STR-T1

type strain: yes

Morphology

cell morphology

  • @ref: 117144
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

@reftype of hemolysishemolysis abilityincubation period
9025beta11-2 days
68370beta1
1171441

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9025COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
9025TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
40573MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
117144CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
9025positivegrowth37mesophilic
40573positivegrowth37mesophilic
48878positivegrowth37mesophilic
117144positivegrowth25-41
117144nogrowth10psychrophilic
117144nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
9025microaerophile
117144facultative anaerobe

halophily

  • @ref: 117144
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

murein

  • @ref: 9025
  • murein short key: A11.24
  • type: A3alpha L-Lys-L-Thr-Gly

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
68370glycogen-builds acid from28087
68370starch+builds acid from28017
68370raffinose-builds acid from16634
68370inulin-builds acid from15443
68370trehalose-builds acid from27082
68370lactose+builds acid from17716
68370D-sorbitol-builds acid from17924
68370D-mannitol-builds acid from16899
68370L-arabinose-builds acid from30849
68370D-ribose+builds acid from16988
68370arginine+hydrolysis29016
68370esculin-hydrolysis4853
68370hippurate+hydrolysis606565
117144esculin+hydrolysis4853
117144hippurate+hydrolysis606565
117144nitrate-reduction17632
117144nitrite-reduction16301
68381arginine+hydrolysis29016
68381D-ribose+builds acid from16988
68381D-mannitol-builds acid from16899
68381sorbitol-builds acid from30911
68381lactose+builds acid from17716
68381trehalose-builds acid from27082
68381raffinose-builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate-hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan+builds acid from27941
68381maltose+builds acid from17306
68381melezitose-builds acid from6731
68381methyl beta-D-glucopyranoside+builds acid from320055
68381urea-hydrolysis16199

metabolite production

@refChebi-IDmetaboliteproduction
6837015688acetoinno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin-
6837015688acetoin-
11714415688acetoin-

enzymes

@refvalueactivityec
9025catalase+1.11.1.6
9025cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381arginine dihydrolase+3.5.3.6
68370arginine dihydrolase+3.5.3.6
68370leucine arylamidase+3.4.11.1
68370alkaline phosphatase+3.1.3.1
68370beta-galactosidase+3.2.1.23
68370beta-glucuronidase-3.2.1.31
68370beta-glucosidase-3.2.1.21
117144oxidase-
117144beta-galactosidase+3.2.1.23
117144alcohol dehydrogenase-1.1.1.1
117144catalase-1.11.1.6
117144gamma-glutamyltransferase-2.3.2.2
117144lysine decarboxylase-4.1.1.18
117144ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
117144-+++-+++--++---+----

API 20STR

@refVPHIPESCPYRAalpha GALbeta GURbeta GALPALLAPADHRIBARAMANSORLACTREINURAFAMDGLYGbeta HEM
9025-+-+/-+/--+++++---+---+-+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
117144------------------------------------------------+

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
9025+++-+++--+--+----++-----++--+---
9025+++-+++--+--+----+++/--+--+++/--++--
9025+-+-+++--+--+----++/------++--+---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
117144-------------------------------------------------------------+-------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typesampling datecountryorigin.countrycontinent
9025bovine mastitis
48878Bovine mastitis1982BelgiumBELEurope
117144Animal, Bovine milk, mastitis

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Infection#Disease
#Infection#Inflammation
#Host Body-Site#Organ#Mammary gland

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
90252Risk group (German classification)
1171442Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus canis strain ATCC 43496 16S ribosomal RNA gene, partial sequenceDQ3031841462ena1329
9025Streptococcus canis DNA for 16S rRNA, strain ATCC 43498, DSM 20715AB0024831499ena1329
9025Streptococcus canis partial 16S rRNA gene, strain NCTC12191AJ4132031472ena1329

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus canis NCTC12191GCA_900636575completencbi1329
66792Streptococcus canis FSL Z3-227482234.3wgspatric482234
66792Streptococcus canis strain NCTC121911329.38completepatric1329

GC content

  • @ref: 9025
  • GC-content: 39.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.95no
gram-positiveyes91.856no
anaerobicno97.394yes
aerobicno93.984yes
halophileyes79.158no
spore-formingno93.828no
thermophileno99.536no
glucose-utilyes87.935no
motileno96.181no
glucose-fermentyes84.148no

External links

@ref: 9025

culture collection no.: DSM 20715, ATCC 43496, CCUG 27661, CIP 103223, CNCTC 18/89, NCTC 12191

straininfo link

  • @ref: 83838
  • straininfo: 9406

literature

  • topic: Genetics
  • Pubmed-ID: 32855249
  • title: Draft Genome Sequence of Blood-Origin Streptococcus canis Strain FU149, Isolated from a Dog with Necrotizing Soft Tissue Infection.
  • authors: Fukushima Y, Murata Y, Katayama Y, Tsuyuki Y, Yoshida H, Mizutani T, Takahashi T
  • journal: Microbiol Resour Announc
  • DOI: 10.1128/MRA.00737-20
  • year: 2020
  • topic2: Phylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9025Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20715)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20715
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40573Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14997
48878Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 27661)https://www.ccug.se/strain?id=27661
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68370Automatically annotated from API 20STR
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
83838Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID9406.1StrainInfo: A central database for resolving microbial strain identifiers
117144Curators of the CIPCollection of Institut Pasteur (CIP 103223)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103223