Strain identifier

BacDive ID: 14715

Type strain: No

Species: Streptococcus alactolyticus

Strain Designation: 76-84-1

Strain history: CIP <- 1988, ATCC, Streptococcus intestinalis <- I.M. Robinson: strain 76-84-1

NCBI tax ID(s): 29389 (species)

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General

@ref: 1908

BacDive-ID: 14715

DSM-Number: 5199

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped

description: Streptococcus alactolyticus 76-84-1 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from colon of a pig.

NCBI tax id

  • NCBI tax id: 29389
  • Matching level: species

strain history

@refhistory
1908<- ATCC <- I.M. Robinson, 76-84-1 (Streptococcus intestinalis)
116172CIP <- 1988, ATCC, Streptococcus intestinalis <- I.M. Robinson: strain 76-84-1

doi: 10.13145/bacdive14715.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus alactolyticus
  • full scientific name: Streptococcus alactolyticus Farrow et al. 1985

  • synonyms

    • @ref: 20215
    • synonym: Streptococcus intestinalis

@ref: 1908

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus alactolyticus

full scientific name: Streptococcus alactolyticus Farrow et al. 1985

strain designation: 76-84-1

type strain: no

Morphology

cell morphology

  • @ref: 116172
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 116172

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1908CORYNEBACTERIUM MEDIUM WITH BLOOD (DSMZ Medium 240)yeshttps://mediadive.dsmz.de/medium/240Name: CORYNEBACTERIUM MEDIUM WITH BLOOD (DSMZ Medium 240) Composition: Defibrinated Blood 50.0 g/l Agar 15.0 g/l Casein peptone 10.0 g/l Yeast extract 5.0 g/l Glucose 5.0 g/l NaCl 5.0 g/l Distilled water
37131MEDIUM 9 - Brain heart infusion BHIyesDistilled water make up to (1000.000 ml);Brain heart infusion (37.000 g)
116172CIP Medium 9yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=9
116172CIP Medium 253yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=253
116172CIP Medium 38yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=38

culture temp

@refgrowthtypetemperaturerange
1908positivegrowth37mesophilic
37131positivegrowth37mesophilic
48861positivegrowth37mesophilic
116172positivegrowth30-41
116172nogrowth10psychrophilic
116172nogrowth25mesophilic
116172nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
48861aerobe
116172facultative anaerobe

halophily

  • @ref: 116172
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

murein

  • @ref: 1908
  • murein short key: A11.29
  • type: A3alpha L-Lys-L-Thr-L-Ser(L-Ala)

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
116172esculin+hydrolysis4853
116172hippurate+hydrolysis606565
116172nitrate-reduction17632
116172nitrite-reduction16301
68381arginine-hydrolysis29016
68381D-ribose-builds acid from16988
68381D-mannitol-builds acid from16899
68381sorbitol-builds acid from30911
68381lactose-builds acid from17716
68381trehalose-builds acid from27082
68381raffinose-builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate-hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan-builds acid from27941
68381maltose+builds acid from17306
68381melibiose-builds acid from28053
68381melezitose-builds acid from6731
68381methyl beta-D-glucopyranoside+builds acid from320055
68381D-tagatose-builds acid from16443
68381urea+hydrolysis16199

metabolite tests

  • @ref: 116172
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68381urease+3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
116172oxidase-
116172beta-galactosidase+3.2.1.23
116172alcohol dehydrogenase-1.1.1.1
116172catalase-1.11.1.6
116172gamma-glutamyltransferase-2.3.2.2
116172lysine decarboxylase-4.1.1.18
116172ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116172--++-+----+-+--++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116172----------+++--------------+--+----+---+--------+/-

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
1908-+--+-------+---+/--------+--+--+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116172-------------------------------------+----------------------+--------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
1908colon of a pigIowaUSAUSANorth America
48861Pig colon contentsUSAUSANorth America
116172Animal, Swine, colonIowaUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Gastrointestinal tract#Large intestine

taxonmaps

  • @ref: 69479
  • File name: preview.99_79944.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_100;97_7129;98_8805;99_79944&stattab=map
  • Last taxonomy: Streptococcus alactolyticus subclade
  • 16S sequence: AB002519
  • Sequence Identity:
  • Total samples: 1044
  • soil counts: 24
  • aquatic counts: 12
  • animal counts: 1004
  • plant counts: 4

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
19081Risk group (German classification)
1161722Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Streptococcus intestinalis DNA for 16S rRNA, strain ATCC 43492
  • accession: AB002519
  • length: 1491
  • database: ena
  • NCBI tax ID: 29389

External links

@ref: 1908

culture collection no.: DSM 5199, ATCC 43492, CCUG 27640, CIP 103224

straininfo link

  • @ref: 83834
  • straininfo: 8002

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1908Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5199)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5199
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37131Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14998
48861Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 27640)https://www.ccug.se/strain?id=27640
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83834Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8002.1StrainInfo: A central database for resolving microbial strain identifiers
116172Curators of the CIPCollection of Institut Pasteur (CIP 103224)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103224