Strain identifier

BacDive ID: 14711

Type strain: Yes

Species: Streptococcus acidominimus

Strain history: CIP <- 1982, NCDO <- 1975, T.M. Higgs, Streptococcus dysgalactiae <- 1956, Cent. Vet. Lab., Weybridge, UK

NCBI tax ID(s): 1326 (species)

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General

@ref: 8970

BacDive-ID: 14711

DSM-Number: 20622

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped, human pathogen

description: Streptococcus acidominimus DSM 20622 is a microaerophile, mesophilic, Gram-positive human pathogen that was isolated from Bovine vagina.

NCBI tax id

  • NCBI tax id: 1326
  • Matching level: species

strain history

@refhistory
8970<- NCDO
116016CIP <- 1982, NCDO <- 1975, T.M. Higgs, Streptococcus dysgalactiae <- 1956, Cent. Vet. Lab., Weybridge, UK

doi: 10.13145/bacdive14711.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus acidominimus
  • full scientific name: Streptococcus acidominimus Ayers and Mudge 1922 (Approved Lists 1980)

@ref: 8970

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus acidominimus

full scientific name: Streptococcus acidominimus Ayers and Mudge 1922

type strain: yes

Morphology

cell morphology

  • @ref: 116016
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 116016

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8970COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8970TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
35079MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
116016CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
8970positivegrowth37mesophilic
35079positivegrowth37mesophilic
48703positivegrowth37mesophilic
116016positivegrowth25-41
116016nogrowth10psychrophilic
116016nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8970microaerophile
48703aerobe
116016facultative anaerobe

halophily

  • @ref: 116016
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

murein

  • @ref: 8970
  • murein short key: A11.49
  • type: A3alpha L-Lys-L-Ser-Gly

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
116016esculin-hydrolysis4853
116016hippurate+hydrolysis606565
116016nitrate-reduction17632
116016nitrite-reduction16301
68381arginine-hydrolysis29016
68381D-ribose-builds acid from16988
68381D-mannitol+builds acid from16899
68381sorbitol-builds acid from30911
68381lactose+builds acid from17716
68381trehalose+builds acid from27082
68381raffinose+builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate+hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan-builds acid from27941
68381maltose+builds acid from17306
68381melibiose-builds acid from28053
68381melezitose-builds acid from6731
68381methyl beta-D-glucopyranoside-builds acid from320055
68381D-tagatose-builds acid from16443
68381urea-hydrolysis16199

antibiotic resistance

  • @ref: 116016
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin-
11601615688acetoin-

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase+3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase+3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
116016oxidase-
116016beta-galactosidase+3.2.1.23
116016alcohol dehydrogenase+1.1.1.1
116016catalase-1.11.1.6
116016gamma-glutamyltransferase-2.3.2.2
116016lysine decarboxylase-4.1.1.18
116016ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116016--++-+--------+-----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116016---------++++--------+-----++-++--+++--+--------+/-

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
8970--++---+-++++----+-+-++--+------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116016---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample type
48703Bovine vagina
116016Animal, Bovine, vagina

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Urogenital tract#Vagina

taxonmaps

  • @ref: 69479
  • File name: preview.99_3420.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_1789;97_2141;98_2624;99_3420&stattab=map
  • Last taxonomy: Streptococcus acidominimus subclade
  • 16S sequence: JX986969
  • Sequence Identity:
  • Total samples: 10135
  • soil counts: 344
  • aquatic counts: 132
  • animal counts: 9636
  • plant counts: 23

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
8970yesyes2Risk group (German classification)
1160162Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus acidominimus strain DSM 20622 16S ribosomal RNA gene, partial sequenceDQ118676441ena1326
20218Streptococcus acidominimus 16S ribosomal RNA gene, partial sequenceEF151153469ena1326
20218S.acidominimus 16S rRNAX583011334ena1326
8970Streptococcus acidominimus strain LMG 17755 16S ribosomal RNA gene, partial sequenceJX9869691500ena1326

Genome sequences

  • @ref: 66792
  • description: Streptococcus acidominimus CCUG 27296
  • accession: GCA_001921825
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1326

GC content

  • @ref: 8970
  • GC-content: 43.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.842no
gram-positiveyes89.214no
anaerobicno96.426no
aerobicno95.116no
halophileyes81.669no
spore-formingno95.263no
thermophileno99.032yes
glucose-utilyes88.722no
motileno96.556no
glucose-fermentyes85.725no

External links

@ref: 8970

culture collection no.: DSM 20622, ATCC 51725, CCUG 27296, LMG 17755, NCDO 2025, LMG 17296, CIP 82.4

straininfo link

  • @ref: 83830
  • straininfo: 93768

literature

  • topic: Phylogeny
  • Pubmed-ID: 29022542
  • title: Streptococcus azizii sp. nov., isolated from naive weanling mice.
  • authors: Shewmaker PL, Whitney AM, Gulvik CA, Lipman NS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002407
  • year: 2017
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Female, Genes, Bacterial, Male, Meningoencephalitis/*microbiology, Mice/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptococcus/*classification/genetics/isolation & purification
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8970Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20622)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20622
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35079Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11271
48703Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 27296)https://www.ccug.se/strain?id=27296
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83830Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID93768.1StrainInfo: A central database for resolving microbial strain identifiers
116016Curators of the CIPCollection of Institut Pasteur (CIP 82.4)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.4