Strain identifier

BacDive ID: 14703

Type strain: No

Species: Lactococcus lactis

Strain Designation: 2

Strain history: <- NCDO <- E. Pijanowski, 2

NCBI tax ID(s): 1358 (species)

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General

@ref: 8881

BacDive-ID: 14703

DSM-Number: 20661

keywords: genome sequence, Bacteria, mesophilic, human pathogen

description: Lactococcus lactis 2 is a mesophilic human pathogen of the family Streptococcaceae.

NCBI tax id

  • NCBI tax id: 1358
  • Matching level: species

strain history

  • @ref: 8881
  • history: <- NCDO <- E. Pijanowski, 2

doi: 10.13145/bacdive14703.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Lactococcus
  • species: Lactococcus lactis
  • full scientific name: Lactococcus lactis (Lister 1873) Schleifer et al. 1986

  • synonyms

    @refsynonym
    20215Streptococcus lactis
    20215Bacterium lactis
    20215Lactobacillus xylosus
    20215Streptococcus lactis subsp. diacetilactis

@ref: 8881

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Lactococcus

species: Lactococcus lactis

full scientific name: Lactococcus lactis (Lister 1873) Schleifer et al. 1986

strain designation: 2

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.867
69480100positive

Culture and growth conditions

culture medium

  • @ref: 8881
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 8881
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no98
69480no99.989

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8881-----+----++++--------+-++++++--+---+--+----------

Safety information

risk assessment

  • @ref: 8881
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactococcus lactis subsp. lactis NCDO176GCA_009663915contigncbi1360
66792Lactococcus lactis strain FDAARGOS_8661358.1329completepatric1358
66792Lactococcus lactis subsp. lactis strain NCDO1761360.552wgspatric1360

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno98no
motileno95.605no
gram-positiveyes95.849no
anaerobicno95.798no
halophileyes71.965no
spore-formingno91.424no
thermophileno99.695yes
glucose-utilyes91.013no
flagellatedno97.51no
aerobicno97.43no
glucose-fermentyes87.195no

External links

@ref: 8881

culture collection no.: DSM 20661, NCDO 176

straininfo link

  • @ref: 83822
  • straininfo: 3418

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology2120190Nucleotide sequence and expression in Escherichia coli of the Lactococcus lactis citrate permease gene.David S, van der Rest ME, Driessen AJ, Simons G, de Vos WMJ Bacteriol10.1128/jb.172.10.5789-5794.19901990Amino Acid Sequence, *Bacterial Proteins, Base Sequence, Cell Membrane/enzymology, Citrates/metabolism, Cloning, Molecular/methods, Escherichia coli/genetics, *Genes, Bacterial, Kinetics, Lactococcus lactis/enzymology/*genetics, Membrane Transport Proteins/*genetics, Molecular Sequence Data, *Organic Anion Transporters, Proline/metabolism, Restriction MappingMetabolism
Enzymology7487049Characterization of plasmid-encoded citrate permease (citP) genes from Leuconostoc species reveals high sequence conservation with the Lactococcus lactis citP gene.Vaughan EE, David S, Harrington A, Daly C, Fitzgerald GF, De Vos WMAppl Environ Microbiol10.1128/aem.61.8.3172-3176.19951995Amino Acid Sequence, *Bacterial Proteins, Base Sequence, Cloning, Molecular, DNA Primers/genetics, DNA, Bacterial/genetics, Genes, Bacterial, Lactococcus lactis/*enzymology/*genetics, Leuconostoc/*enzymology/*genetics, Membrane Transport Proteins/*genetics, Molecular Sequence Data, *Organic Anion Transporters, Plasmids/*genetics, Restriction Mapping, Sequence Homology, Amino Acid, Species SpecificityGenetics

Reference

@idauthorscataloguedoi/urltitle
8881Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20661)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20661
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83822Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3418.1StrainInfo: A central database for resolving microbial strain identifiers