Strain identifier

BacDive ID: 14691

Type strain: Yes

Species: Lactococcus cremoris

Strain Designation: HP

Strain history: CIP <- 1986, NCFB, Streptococcus cremoris <- H.R. Whitehead: strain HP

NCBI tax ID(s): 1348655 (strain), 1359 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8499

BacDive-ID: 14691

DSM-Number: 20069

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped, human pathogen

description: Lactococcus cremoris HP is a microaerophile, mesophilic, Gram-positive human pathogen of the family Streptococcaceae.

NCBI tax id

NCBI tax idMatching level
1359species
1348655strain

strain history

@refhistory
8499<- ATCC <- NCDO <- NIRD <- Whitehead, HP
67770CIP 102301 <-- NCFB 607 <-- H. R. Whitehead strain HP.
118783CIP <- 1986, NCFB, Streptococcus cremoris <- H.R. Whitehead: strain HP

doi: 10.13145/bacdive14691.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Lactococcus
  • species: Lactococcus cremoris
  • full scientific name: Lactococcus cremoris (Orla-Jensen 1919) Li et al. 2021
  • synonyms

    @refsynonym
    20215Streptococcus cremoris
    20215Lactococcus lactis subsp. cremoris
    20215Streptococcus lactis subsp. cremoris

@ref: 8499

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Lactococcus

species: Lactococcus cremoris subsp. cremoris

full scientific name: Lactococcus cremoris subsp. cremoris (Orla-Jensen 1919) Li et al. 2021

strain designation: HP

type strain: yes

Morphology

cell morphology

  • @ref: 118783
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8499TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
42090MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
118783CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
118783CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
8499positivegrowth30mesophilic
42090positivegrowth30mesophilic
47521positivegrowth37mesophilic
67770positivegrowth30mesophilic
118783positivegrowth15-30
118783nogrowth10psychrophilic
118783nogrowth37mesophilic
118783nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
47521microaerophile
118783facultative anaerobe

murein

  • @ref: 8499
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11878317632nitrate-reduction
11878316301nitrite-reduction
11878317632nitrate+respiration
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837916988D-ribose+fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917716lactose+fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose-builds acid from
6838116634raffinose-builds acid from
6838117992sucrose-builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose-builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

antibiotic resistance

  • @ref: 118783
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381arginine dihydrolase-3.5.3.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15
118783oxidase-
118783alcohol dehydrogenase-1.1.1.1
118783catalase-1.11.1.6
118783lysine decarboxylase-4.1.1.18
118783ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlRIBXYLMANLACSACGLYG
47521-++-----+---+--+--

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118783--++-+----++--------

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
8499-++------+------++----+---------
8499-++/---+---+------++--------------
8499-++--+/----+------++--------------
8499-+/--------+------++----+---------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
42090New zealandNZLAustralia and Oceania
47521Cheese starter culture
67770Raw milk
118783New ZealandNZLAustralia and Oceania

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Dairy product
#Engineered#Food production#Starter culture

taxonmaps

  • @ref: 69479
  • File name: preview.99_170.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_58;96_124;97_132;98_149;99_170&stattab=map
  • Last taxonomy: Lactococcus
  • 16S sequence: LC483568
  • Sequence Identity:
  • Total samples: 157686
  • soil counts: 7135
  • aquatic counts: 13841
  • animal counts: 132033
  • plant counts: 4677

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
8499yes, in single casesyes, in single cases1Risk group (German classification)
1187831Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactococcus lactis subsp. lactis gene for 16S rRNA, partial sequence, strain: YIT 2008 (= ATCC 19435)AB0082151540ena1360
20218Streptococcus cremoris 16S ribosomal RNAM588361496ena1359
20218Lactococcus lactis subsp. cremoris strain NIZO2418T 16S ribosomal RNA gene, partial sequenceEU091472519ena1359
20218Lactococcus lactis subsp. cremoris gene for 16S rRNA, partial sequence, strain: NBRC 100676AB6812191466ena1359
20218Lactococcus lactis subsp. cremoris gene for 16S rRNA, partial sequence, strain: NCDO 607TAB1008021499ena1359
67770Lactococcus lactis subsp. cremoris gene for 16S rRNA, partial sequence, strain: YIT 2007 (= ATCC 19257)AB0082141540ena1359
67770Lactococcus lactis subsp. cremoris gene for 16S ribosomal RNA, partial sequenceLC4835681485ena1359

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactococcus cremoris ATCC 19257GCA_002441765scaffoldncbi1359
66792Lactococcus cremoris HPGCA_001622215contigncbi1359
66792Lactococcus lactis subsp. cremoris NBRC 1006761348655.3wgspatric1348655
66792Lactococcus lactis subsp. cremoris strain ATCC 192571359.227wgspatric1359
66792Lactococcus lactis subsp. cremoris strain ATCC 192571359.117wgspatric1359
66792Lactococcus lactis subsp. cremoris strain LMG68971359.37wgspatric1359
66792Lactococcus lactis ATCC 192572903255457draftimg1358
66792Lactococcus lactis cremoris NBRC 1006762731957663draftimg1348655
66792Lactococcus cremoris LMG68972740892534draftimg1359
67770Lactococcus cremoris subsp. cremoris NBRC 100676GCA_001591705contigncbi1348655
67770Lactococcus cremoris LMG6897GCA_001622295contigncbi1359
67770Lactococcus cremoris ATCC 19257GCA_004354515scaffoldncbi1359
66792Lactococcus cremoris subsp. cremoris HPGCA_000534815contigncbi1295827

GC content

@refGC-contentmethod
849935.4
6777034.8-35.6thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno95.845no
gram-positiveyes94.11no
anaerobicno94.888no
halophileyes73.802no
spore-formingno93.622no
thermophileno99.623yes
glucose-utilyes90.001no
aerobicno97.193yes
flagellatedno96.999no
glucose-fermentyes89.268no

External links

@ref: 8499

culture collection no.: DSM 20069, ATCC 19257, NCDO 607, NCIB 8662, CCUG 21953, LMG 6897, IMET 10707, JCM 16167, BCRC 12586, CECT 7100, CIP 102301, CNCTC 6910, HAMBI 1588, NBRC 100676, NCFB 607, NCIMB 8662

straininfo link

  • @ref: 83814
  • straininfo: 92452

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15599522Quantification by real-time PCR of Lactococcus lactis subsp. cremoris in milk fermented by a mixed culture.Grattepanche F, Lacroix C, Audet P, Lapointe GAppl Microbiol Biotechnol10.1007/s00253-004-1705-42004Animals, Base Sequence, Colony Count, Microbial/*methods, DNA Primers/genetics, DNA, Bacterial/genetics, Drug Resistance, Bacterial, Fermentation, Food Microbiology, Food Technology, Lactococcus lactis/classification/drug effects/*genetics/*isolation & purification, Milk/*microbiology, Nisin/*analogs & derivatives/pharmacology, Polymerase Chain Reaction/*methods, Species SpecificityBiotechnology
Phylogeny33650946Elevation of Lactococcus lactis subsp. cremoris to the species level as Lactococcus cremoris sp. nov. and transfer of Lactococcus lactis subsp. tructae to Lactococcus cremoris as Lactococcus cremoris subsp. tructae comb. nov.Li TT, Tian WL, Gu CTInt J Syst Evol Microbiol10.1099/ijsem.0.0047272021

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8499Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20069)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20069
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42090Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/13972
47521Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 21953)https://www.ccug.se/strain?id=21953
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83814Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92452.1StrainInfo: A central database for resolving microbial strain identifiers
118783Curators of the CIPCollection of Institut Pasteur (CIP 102301)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102301