Strain identifier
BacDive ID: 146880
Type strain: 
Species: Bilophila wadsworthia
NCBI tax ID(s): 1408428 (strain), 35833 (species)
version 8.1 (current version)
General
@ref: 50968
BacDive-ID: 146880
keywords: genome sequence, Bacteria, anaerobe, motile
description: Bilophila wadsworthia CCUG 32349 is an anaerobe, motile bacterium that was isolated from Human perforated appendiceal abscess.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 35833 | species |
| 1408428 | strain |
doi: 10.13145/bacdive146880.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Bilophila
- species: Bilophila wadsworthia
- full scientific name: Bilophila wadsworthia Baron et al. 1990
@ref: 50968
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Bilophila
species: Bilophila wadsworthia
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 91.634 | |
| 69480 | 99.999 | negative |
colony morphology
- @ref: 50968
- incubation period: 3-4 days
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 50968 | anaerobe | |
| 69480 | anaerobe | 99.247 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.797 |
| 69481 | no | 97 |
Isolation, sampling and environmental information
isolation
- @ref: 50968
- sample type: Human perforated appendiceal abscess
- geographic location: CA,Los Angeles
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Gastrointestinal tract | |
| #Host Body-Site | #Other | #Abscess |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bilophila wadsworthia ATCC 49260 | GCA_000701705 | scaffold | ncbi | 1408428 |
| 66792 | Bilophila wadsworthia ATCC 49260 | 1408428.3 | wgs | patric | 1408428 |
| 66792 | Bilophila wadsworthia ATCC 49260 | 2561511128 | draft | img | 1408428 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 97 | no |
| motile | no | 61.631 | no |
| flagellated | no | 84.641 | no |
| gram-positive | no | 98.799 | no |
| anaerobic | yes | 98.823 | no |
| halophile | no | 86.336 | no |
| spore-forming | no | 94.508 | no |
| thermophile | no | 98.614 | no |
| glucose-util | no | 67.065 | no |
| aerobic | no | 95.089 | yes |
| glucose-ferment | no | 81.257 | no |
External links
@ref: 50968
culture collection no.: CCUG 32349, ATCC 49260
straininfo link
- @ref: 101675
- straininfo: 46872
literature
- topic: Pathogenicity
- Pubmed-ID: 9310711
- title: Bilophila wadsworthia clinical isolates compared by polymerase chain reaction fingerprinting.
- authors: Hunt Gerardo S, Marina M, Citron DM, Claros MC, Hudspeth MK, Goldstein EJ
- journal: Clin Infect Dis
- DOI: 10.1086/516229
- year: 1997
- mesh: Brain Abscess/microbiology, Cholesteatoma/microbiology, *DNA Fingerprinting, Gram-Negative Anaerobic Bacteria/*genetics, Humans, *Polymerase Chain Reaction
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 50968 | Curators of the CCUG | https://www.ccug.se/strain?id=32349 | Culture Collection University of Gothenburg (CCUG) (CCUG 32349) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 101675 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID46872.1 |