Strain identifier

BacDive ID: 14685

Type strain: No

Species: Lactococcus garvieae

Strain Designation: 43113

Strain history: <- Kiel, 43113 (Streptococcus lactis)

NCBI tax ID(s): 1363 (species)

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General

@ref: 8637

BacDive-ID: 14685

DSM-Number: 20385

keywords: genome sequence, Bacteria, mesophilic, human pathogen

description: Lactococcus garvieae 43113 is a mesophilic human pathogen that was isolated from raw milk.

NCBI tax id

  • NCBI tax id: 1363
  • Matching level: species

strain history

  • @ref: 8637
  • history: <- Kiel, 43113 (Streptococcus lactis)

doi: 10.13145/bacdive14685.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Lactococcus
  • species: Lactococcus garvieae
  • full scientific name: Lactococcus garvieae (Collins et al. 1984) Schleifer et al. 1986

  • synonyms

    @refsynonym
    20215Enterococcus seriolicida
    20215Streptococcus garvieae

@ref: 8637

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Lactococcus

species: Lactococcus garvieae

full scientific name: Lactococcus garvieae (Collins et al. 1984) Schleifer et al. 1986

strain designation: 43113

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no97.281
69480100positive

Culture and growth conditions

culture medium

  • @ref: 8637
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 8637
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.985

murein

  • @ref: 8637
  • murein short key: A11.12
  • type: A3alpha L-Lys-L-Ala2-Gly-L-Ala

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838129016arginine+hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol+builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose+builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose+builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase+3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase+3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
8637++-----+--+-+---++-+-----+--++--

Isolation, sampling and environmental information

isolation

  • @ref: 8637
  • sample type: raw milk

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Milk
#Host#Mammals

Safety information

risk assessment

  • @ref: 8637
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Lactococcus garvieae strain FDAARGOS_1062
  • accession: 1363.318
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 1363

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.061no
gram-positiveyes96.032no
anaerobicno96.461no
halophileyes85.595no
spore-formingno94.642no
thermophileno99.817yes
glucose-utilyes90.974no
flagellatedno97.422no
aerobicno96.866no
glucose-fermentyes87.785no

External links

@ref: 8637

culture collection no.: DSM 20385

straininfo link

  • @ref: 83811
  • straininfo: 3392

Reference

@idauthorscataloguedoi/urltitle
8637Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20385)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20385
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83811Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3392.1StrainInfo: A central database for resolving microbial strain identifiers