Strain identifier
BacDive ID: 14682
Type strain: 
Species: Lactovum miscens
Strain Designation: AnNAG3
Strain history: <- H.L. Drake, strain anNAG3
NCBI tax ID(s): 190387 (species)
version 8.1 (current version)
General
@ref: 5448
BacDive-ID: 14682
DSM-Number: 14925
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Lactovum miscens AnNAG3 is a mesophilic bacterium that was isolated from acidic forest soil.
NCBI tax id
- NCBI tax id: 190387
- Matching level: species
strain history
- @ref: 5448
- history: <- H.L. Drake, strain anNAG3
doi: 10.13145/bacdive14682.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Lactovum
- species: Lactovum miscens
- full scientific name: Lactovum miscens Matthies et al. 2005
@ref: 5448
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Lactovum
species: Lactovum miscens
full scientific name: Lactovum miscens Matthies et al. 2005
strain designation: AnNAG3
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 96.546 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 5448
- name: MRS pre-reduced (DSMZ Medium 11b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11b
- composition: Name: MRS MEDIUM (pre-reduced) (DSMZ Medium 11b) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Resazurin 0.001 g/l Distilled water
culture temp
- @ref: 5448
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 5448
- sample type: acidic forest soil
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Acidic |
Safety information
risk assessment
- @ref: 5448
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5448
- description: Lactovum miscens 16S rRNA gene, strain anNAG3
- accession: AJ439543
- length: 1482
- database: ena
- NCBI tax ID: 190387
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Lactovum miscens DSM 14925 | GCA_014202895 | scaffold | ncbi | 190387 |
| 66792 | Lactovum miscens strain DSM 14925 | 190387.3 | wgs | patric | 190387 |
| 66792 | Lactovum miscens DSM 14925 | 2861643106 | draft | img | 190387 |
GC content
- @ref: 5448
- GC-content: 37.6
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 97.829 | no |
| gram-positive | yes | 91.983 | no |
| anaerobic | no | 84.445 | no |
| aerobic | no | 97.52 | no |
| halophile | yes | 78.103 | no |
| spore-forming | no | 96.93 | no |
| glucose-util | yes | 90.714 | no |
| thermophile | no | 99.738 | no |
| glucose-ferment | yes | 85.592 | no |
| motile | no | 94.178 | no |
External links
@ref: 5448
culture collection no.: DSM 14925, ATCC BAA 490
straininfo link
- @ref: 83808
- straininfo: 118385
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5448 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14925) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14925 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 83808 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID118385.1 | StrainInfo: A central database for resolving microbial strain identifiers |