Strain identifier
BacDive ID: 14675
Type strain:
Species: Staphylococcus rostri
Strain history: <- V. Perreten, Univ. Berne, Switzerland; ARI 602 <- A. Riesen {2008}
NCBI tax ID(s): 522262 (species)
General
@ref: 16069
BacDive-ID: 14675
DSM-Number: 21969
keywords: 16S sequence, Bacteria, aerobe, mesophilic
description: Staphylococcus rostri DSM 21969 is an aerobe, mesophilic bacterium that was isolated from nasal cavity of a healthy pig.
NCBI tax id
- NCBI tax id: 522262
- Matching level: species
strain history
- @ref: 16069
- history: <- V. Perreten, Univ. Berne, Switzerland; ARI 602 <- A. Riesen {2008}
doi: 10.13145/bacdive14675.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Staphylococcus
- species: Staphylococcus rostri
- full scientific name: Staphylococcus rostri Riesen and Perreten 2010
@ref: 16069
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus rostri
full scientific name: Staphylococcus rostri Riesen and Perreten 2010
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
16069 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
16069 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16069 | positive | growth | 37 | mesophilic |
61266 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 61266
- oxygen tolerance: aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68379 | 17632 | nitrate | + | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | + | fermentation |
68379 | 16988 | D-ribose | + | fermentation |
68379 | 65327 | D-xylose | + | fermentation |
68379 | 16899 | D-mannitol | + | fermentation |
68379 | 17306 | maltose | + | fermentation |
68379 | 17716 | lactose | + | fermentation |
68379 | 17992 | sucrose | + | fermentation |
68379 | 28087 | glycogen | - | fermentation |
68375 | 16199 | urea | - | hydrolysis |
68375 | 29016 | arginine | - | hydrolysis |
68375 | 18257 | ornithine | - | degradation |
68375 | 4853 | esculin | - | hydrolysis |
68375 | 17634 | D-glucose | + | fermentation |
68375 | 15824 | D-fructose | + | fermentation |
68375 | 16024 | D-mannose | - | fermentation |
68375 | 17306 | maltose | - | fermentation |
68375 | 17716 | lactose | + | fermentation |
68375 | 27082 | trehalose | + | fermentation |
68375 | 16899 | D-mannitol | - | fermentation |
68375 | 16634 | raffinose | - | fermentation |
68375 | 16988 | D-ribose | - | fermentation |
68375 | 17057 | cellobiose | - | fermentation |
68375 | 17632 | nitrate | + | reduction |
68375 | 17992 | sucrose | + | fermentation |
68375 | 59640 | N-acetylglucosamine | + | fermentation |
68375 | 32528 | turanose | - | fermentation |
68375 | 22599 | arabinose | - | fermentation |
68378 | 17634 | D-glucose | - | builds acid from |
68378 | 15824 | D-fructose | + | builds acid from |
68378 | 16024 | D-mannose | + | builds acid from |
68378 | 17306 | maltose | - | builds acid from |
68378 | 17716 | lactose | - | builds acid from |
68378 | 27082 | trehalose | + | builds acid from |
68378 | 16899 | D-mannitol | + | builds acid from |
68378 | 17151 | xylitol | - | builds acid from |
68378 | 28053 | melibiose | - | builds acid from |
68378 | 17632 | nitrate | - | reduction |
68378 | 16634 | raffinose | - | builds acid from |
68378 | 65327 | D-xylose | - | builds acid from |
68378 | 17992 | sucrose | + | builds acid from |
68378 | 320061 | methyl alpha-D-glucopyranoside | + | builds acid from |
68378 | 59640 | N-acetylglucosamine | - | builds acid from |
68378 | 29016 | arginine | + | hydrolysis |
68378 | 16199 | urea | - | hydrolysis |
antibiotic resistance
- @ref: 68378
- metabolite: lysostaphin
- is antibiotic: yes
- is sensitive: yes
metabolite production
- @ref: 68378
- Chebi-ID: 15688
- metabolite: acetoin
- production: yes
metabolite tests
- @ref: 68378
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
68378 | urease | - | 3.5.1.5 |
68378 | arginine dihydrolase | + | 3.5.3.6 |
68378 | alkaline phosphatase | + | 3.1.3.1 |
68375 | beta-glucuronidase | - | 3.2.1.31 |
68375 | alkaline phosphatase | + | 3.1.3.1 |
68375 | L-arginine arylamidase | - | |
68375 | beta-galactosidase | - | 3.2.1.23 |
68375 | beta-glucosidase | - | 3.2.1.21 |
68375 | ornithine decarboxylase | - | 4.1.1.17 |
68375 | arginine dihydrolase | - | 3.5.3.6 |
68375 | urease | - | 3.5.1.5 |
68379 | catalase | + | 1.11.1.6 |
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | - | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68379 | pyrazinamidase | + | 3.5.1.B15 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 61266 C14:0 0.7 14 61266 C16:0 5.5 16 61266 C18:0 5.1 18 61266 C20:0 0.7 20 61266 C13:0 iso 0.7 12.612 61266 C15:0 ANTEISO 13.6 14.711 61266 C15:0 ISO 47.4 14.621 61266 C17:0 anteiso 3.2 16.722 61266 C17:0 iso 6.1 16.629 61266 C18:1 ω9c 4 17.769 61266 C18:2 ω6,9c/C18:0 ANTE 9.8 17.724 61266 C20:2 ω6,9c 3.2 19.735 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61266 | + | + | + | + | - | - | - | - | - | - | - | - | + | + | + | + | + | + | + | - | + |
API ID32STA
@ref | URE | ADH Arg | ODC | ESC | GLU | FRU | MNE | MAL | LAC | TRE | MAN | RAF | RIB | CEL | NIT | VP | beta GAL | ArgA | PAL | PyrA | NOVO | SAC | NAG | TUR | ARA | beta GUR |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
16069 | - | - | - | - | + | + | - | - | + | + | - | - | - | - | + | + | - | - | + | + | + | + | + | - | - | - |
61266 | - | - | - | - | + | + | - | - | + | + | - | - | - | - | + | - | - | - | + | - | - | + | + | - | - | - |
API STA
@ref | GLU | FRU | MNE | MAL | LAC | TRE | MAN | XLT | MEL | NIT | PAL | VP | RAF | XYL | SAC | MDG | NAG | ADH | URE | LSTR |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61266 | - | + | + | - | - | + | + | - | - | - | + | + | - | - | + | + | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|
16069 | nasal cavity of a healthy pig | Berne | Switzerland | CHE | Europe | |
61266 | Pig,nose,healthy animal (Edelschwein) | Bern | Switzerland | CHE | Europe | 2008-01-16 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Suidae (Pig,Swine) |
#Host Body-Site | #Organ | #Nose |
Sequence information
16S sequences
- @ref: 16069
- description: Staphylococcus rostri 16S rRNA gene, strain ARI 602
- accession: AM989462
- length: 1413
- database: ena
- NCBI tax ID: 522262
GC content
- @ref: 16069
- GC-content: 39
- method: high performance liquid chromatography (HPLC)
External links
@ref: 16069
culture collection no.: DSM 21969, CCUG 57267, ARI 602
straininfo link
- @ref: 83801
- straininfo: 399802
literature
- topic: Phylogeny
- Pubmed-ID: 19819995
- title: Staphylococcus rostri sp. nov., a haemolytic bacterium isolated from the noses of healthy pigs.
- authors: Riesen A, Perreten V
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.012443-0
- year: 2009
- mesh: Animals, Bacterial Proteins/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Hemolysin Proteins/metabolism, Hemolysis, Molecular Sequence Data, Nose/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Staphylococcus/*classification/genetics/*isolation & purification/metabolism, Sus scrofa/*microbiology, Switzerland
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
16069 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21969) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21969 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
61266 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 57267) | https://www.ccug.se/strain?id=57267 | |
68375 | Automatically annotated from API ID32STA | |||
68378 | Automatically annotated from API STA | |||
68379 | Automatically annotated from API Coryne | |||
83801 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID399802.1 | StrainInfo: A central database for resolving microbial strain identifiers |