Strain identifier

BacDive ID: 14675

Type strain: No

Species: Staphylococcus rostri

Strain history: <- V. Perreten, Univ. Berne, Switzerland; ARI 602 <- A. Riesen {2008}

NCBI tax ID(s): 522262 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 16069

BacDive-ID: 14675

DSM-Number: 21969

keywords: 16S sequence, Bacteria, aerobe, mesophilic

description: Staphylococcus rostri DSM 21969 is an aerobe, mesophilic bacterium that was isolated from nasal cavity of a healthy pig.

NCBI tax id

  • NCBI tax id: 522262
  • Matching level: species

strain history

  • @ref: 16069
  • history: <- V. Perreten, Univ. Berne, Switzerland; ARI 602 <- A. Riesen {2008}

doi: 10.13145/bacdive14675.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus rostri
  • full scientific name: Staphylococcus rostri Riesen and Perreten 2010

@ref: 16069

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus rostri

full scientific name: Staphylococcus rostri Riesen and Perreten 2010

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16069COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16069TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16069positivegrowth37mesophilic
61266positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 61266
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate+reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose+fermentation
6837916988D-ribose+fermentation
6837965327D-xylose+fermentation
6837916899D-mannitol+fermentation
6837917306maltose+fermentation
6837917716lactose+fermentation
6837917992sucrose+fermentation
6837928087glycogen-fermentation
6837516199urea-hydrolysis
6837529016arginine-hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose-fermentation
6837517306maltose-fermentation
6837517716lactose+fermentation
6837527082trehalose+fermentation
6837516899D-mannitol-fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine+fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation
6837817634D-glucose-builds acid from
6837815824D-fructose+builds acid from
6837816024D-mannose+builds acid from
6837817306maltose-builds acid from
6837817716lactose-builds acid from
6837827082trehalose+builds acid from
6837816899D-mannitol+builds acid from
6837817151xylitol-builds acid from
6837828053melibiose-builds acid from
6837817632nitrate-reduction
6837816634raffinose-builds acid from
6837865327D-xylose-builds acid from
6837817992sucrose+builds acid from
68378320061methyl alpha-D-glucopyranoside+builds acid from
6837859640N-acetylglucosamine-builds acid from
6837829016arginine+hydrolysis
6837816199urea-hydrolysis

antibiotic resistance

  • @ref: 68378
  • metabolite: lysostaphin
  • is antibiotic: yes
  • is sensitive: yes

metabolite production

  • @ref: 68378
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68378
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68378urease-3.5.1.5
68378arginine dihydrolase+3.5.3.6
68378alkaline phosphatase+3.1.3.1
68375beta-glucuronidase-3.2.1.31
68375alkaline phosphatase+3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase-3.5.3.6
68375urease-3.5.1.5
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    61266C14:00.714
    61266C16:05.516
    61266C18:05.118
    61266C20:00.720
    61266C13:0 iso0.712.612
    61266C15:0 ANTEISO13.614.711
    61266C15:0 ISO47.414.621
    61266C17:0 anteiso3.216.722
    61266C17:0 iso6.116.629
    61266C18:1 ω9c417.769
    61266C18:2 ω6,9c/C18:0 ANTE9.817.724
    61266C20:2 ω6,9c3.219.735
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
61266++++--------+++++++-+

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
16069----++--++----++--+++++---
61266----++--++----+---+--++---

API STA

@refGLUFRUMNEMALLACTREMANXLTMELNITPALVPRAFXYLSACMDGNAGADHURELSTR
61266-++--++---++--++-+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
16069nasal cavity of a healthy pigBerneSwitzerlandCHEEurope
61266Pig,nose,healthy animal (Edelschwein)BernSwitzerlandCHEEurope2008-01-16

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Organ#Nose

Sequence information

16S sequences

  • @ref: 16069
  • description: Staphylococcus rostri 16S rRNA gene, strain ARI 602
  • accession: AM989462
  • length: 1413
  • database: ena
  • NCBI tax ID: 522262

GC content

  • @ref: 16069
  • GC-content: 39
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 16069

culture collection no.: DSM 21969, CCUG 57267, ARI 602

straininfo link

  • @ref: 83801
  • straininfo: 399802

literature

  • topic: Phylogeny
  • Pubmed-ID: 19819995
  • title: Staphylococcus rostri sp. nov., a haemolytic bacterium isolated from the noses of healthy pigs.
  • authors: Riesen A, Perreten V
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.012443-0
  • year: 2009
  • mesh: Animals, Bacterial Proteins/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Hemolysin Proteins/metabolism, Hemolysis, Molecular Sequence Data, Nose/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Staphylococcus/*classification/genetics/*isolation & purification/metabolism, Sus scrofa/*microbiology, Switzerland
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
16069Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21969)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21969
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
61266Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 57267)https://www.ccug.se/strain?id=57267
68375Automatically annotated from API ID32STA
68378Automatically annotated from API STA
68379Automatically annotated from API Coryne
83801Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID399802.1StrainInfo: A central database for resolving microbial strain identifiers