Strain identifier
version 8.1 (current version)
General
@ref: 50758
BacDive-ID: 146706
keywords: genome sequence, Bacteria, motile
description: Escherichia coli CCUG 31997 is a motile bacterium that was isolated from Human feces.
NCBI tax id
- NCBI tax id: 562
- Matching level: species
doi: 10.13145/bacdive146706.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 50758
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 96.604 | |
69480 | 99.984 | negative |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.533 |
69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 50758
- sample type: Human feces
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Escherichia coli NCTC10960 | GCA_900450135 | contig | ncbi | 562 |
66792 | Escherichia coli strain NCTC10960 | 562.34315 | wgs | patric | 562 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | no | 98.213 | no |
anaerobic | no | 94.859 | no |
halophile | no | 90.773 | no |
spore-forming | no | 94.084 | no |
glucose-util | yes | 94.276 | no |
thermophile | no | 98.961 | no |
flagellated | no | 62.38 | no |
motile | yes | 87.602 | no |
aerobic | yes | 88.025 | no |
glucose-ferment | yes | 92.197 | no |
External links
@ref: 50758
culture collection no.: CCUG 31997, NCTC 10960
straininfo link
- @ref: 101531
- straininfo: 53804
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
50758 | Curators of the CCUG | https://www.ccug.se/strain?id=31997 | Culture Collection University of Gothenburg (CCUG) (CCUG 31997) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
101531 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID53804.1 |