Strain identifier

BacDive ID: 14662

Type strain: Yes

Species: Staphylococcus equorum

Strain Designation: PA 231, PA231

Strain history: CIP <- 1992, N. El Sohl, Inst. Pasteur, Paris, France <- D. Nzuambe, Belgium: strain PA231

NCBI tax ID(s): 246432 (species)

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General

@ref: 8996

BacDive-ID: 14662

DSM-Number: 20674

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, coccus-shaped

description: Staphylococcus equorum PA 231 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from skin of horse.

NCBI tax id

  • NCBI tax id: 246432
  • Matching level: species

strain history

@refhistory
8996<- K.H. Schleifer <- D. Nzuambe, PA 231
119126CIP <- 1992, N. El Sohl, Inst. Pasteur, Paris, France <- D. Nzuambe, Belgium: strain PA231

doi: 10.13145/bacdive14662.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus equorum
  • full scientific name: Staphylococcus equorum Schleifer et al. 1985

@ref: 8996

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus equorum

full scientific name: Staphylococcus equorum Schleifer et al. 1985 emend. Jeong et al. 2013

strain designation: PA 231, PA231

type strain: yes

Morphology

cell morphology

  • @ref: 119126
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

@reftype of hemolysisincubation periodhemolysis ability
8996gamma1-2 days
1191261

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8996COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8996TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
36422MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
119126CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
119126CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
8996positivegrowth37mesophilic
36422positivegrowth37mesophilic
119126positivegrowth15-37
119126nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119126
  • oxygen tolerance: obligate aerobe

murein

  • @ref: 8996
  • murein short key: A11.02
  • type: A3alpha L-Lys-Gly5-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11912617632nitrate+reduction
11912616301nitrite-reduction
11912635020tributyrin-hydrolysis
6837529016arginine-hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837517306maltose+fermentation
6837517716lactose+fermentation
6837516899D-mannitol+fermentation
6837517992sucrose+fermentation

antibiotic resistance

  • @ref: 119126
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 119126
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 119126
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
8996catalase+1.11.1.6
8996cytochrome-c oxidase-1.9.3.1
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase-3.5.3.6
119126oxidase-
119126beta-galactosidase+3.2.1.23
119126alcohol dehydrogenase-1.1.1.1
119126gelatinase-
119126DNase-
119126catalase+1.11.1.6
119126coagulase-
119126lecithinase-
119126lysine decarboxylase-4.1.1.18
119126ornithine decarboxylase-4.1.1.17
119126urease+3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
8996+---++-++++---+-+----+---+/-
8996+---++-++-+---+-+---++---+
8996----+++++++++++/-+/-+/-+/-+/-+/-++++++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
8996skin of horse
49912Horse skinBelgiumBELEurope
119126Animal, Horse, skin

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Equidae (Horse)
#Host Body-Site#Organ#Skin, Nail, Hair

taxonmaps

  • @ref: 69479
  • File name: preview.99_743.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3;97_3;98_3;99_743&stattab=map
  • Last taxonomy: Staphylococcus
  • 16S sequence: AB009939
  • Sequence Identity:
  • Total samples: 4759
  • soil counts: 295
  • aquatic counts: 209
  • animal counts: 4104
  • plant counts: 151

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
89961Risk group (German classification)
1191261Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Staphylococcus equorum 16S ribosomal RNA gene, partial sequenceAF041363938ena246432
20218Staphylococcus equorum subsp. equorum strain DSM 20674 16S ribosomal RNA gene, partial sequenceAY688054464ena29383
20218S.equorum gene for 16S ribosomal RNAZ26895771ena29383
8996Staphylococcus equorum rrn gene for 16S ribosomal RNAAB0099391494ena246432

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus equorum subsp. equorum NCTC 12414GCA_003970515scaffoldncbi29383
66792Staphylococcus equorum strain FDAARGOS_1149246432.121completepatric246432
66792Staphylococcus equorum strain NCTC12414246432.90wgspatric246432
66792Staphylococcus equorum subsp. equorum strain NCTC 1241429383.5wgspatric29383
66792Staphylococcus equorum NCTC12414GCA_900458565contigncbi246432

GC content

  • @ref: 8996
  • GC-content: 34.7

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno89.689no
gram-positiveyes91.89no
anaerobicno99.266no
aerobicyes93.867no
halophileyes95.902no
spore-formingno91.687no
glucose-utilyes90.506no
flagellatedno92.348no
thermophileno99.786yes
glucose-fermentyes85.383yes

External links

@ref: 8996

culture collection no.: DSM 20674, ATCC 43958, CCUG 30109, CCM 3832, NCTC 12414, CIP 103502, NRRL B-14765

straininfo link

  • @ref: 83788
  • straininfo: 42149

literature

  • topic: Phylogeny
  • Pubmed-ID: 24057981
  • title: A proposal to unify two subspecies of Staphylococcus equorum: Staphylococcus equorum subsp. equorum and Staphylococcus equorum subsp. linens.
  • authors: Jeong DW, Kim HR, Han S, Jeon CO, Lee JH
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-013-0025-z
  • year: 2013
  • mesh: Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Food Microbiology, Genotype, Molecular Sequence Data, Molecular Typing, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Staphylococcus/*classification/genetics/*isolation & purification/physiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8996Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20674)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20674
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36422Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15306
49912Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30109)https://www.ccug.se/strain?id=30109
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68375Automatically annotated from API ID32STA
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83788Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42149.1StrainInfo: A central database for resolving microbial strain identifiers
119126Curators of the CIPCollection of Institut Pasteur (CIP 103502)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103502