Strain identifier

BacDive ID: 146458

Type strain: No

Species: Sphingomonas sp.

NCBI tax ID(s): 28214 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 50472

BacDive-ID: 146458

keywords: Bacteria

description: Sphingomonas sp. CCUG 31200 is a bacterium that was isolated from Water,enrichment with dibenzofuran.

NCBI tax id

  • NCBI tax id: 28214
  • Matching level: species

doi: 10.13145/bacdive146458.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingomonas
  • species: Sphingomonas sp.
  • full scientific name: Sphingomonas Yabuuchi et al. 1990

@ref: 50472

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas sp.

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    50472C16:012.716
    5047211 methyl 18:1 ω7c7.318.081
    50472C14:0 2OH6.915.205
    50472C16:1 ω5c1.315.908
    50472C16:1 ω7c17.415.819
    50472C17:1 ω6c7.916.862
    50472C18:1 ω5c3.917.919
    50472C18:1 ω7c /12t/9t42.717.824
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
50472--------------------+

Isolation, sampling and environmental information

isolation

  • @ref: 50472
  • sample type: Water,enrichment with dibenzofuran
  • geographic location: Elbe river
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

External links

@ref: 50472

culture collection no.: CCUG 31200

straininfo link

  • @ref: 101336
  • straininfo: 57059

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
50472Curators of the CCUGhttps://www.ccug.se/strain?id=31200Culture Collection University of Gothenburg (CCUG) (CCUG 31200)
68369Automatically annotated from API 20NE
101336Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID57059.1