Strain identifier
BacDive ID: 14632
Type strain:
Species: Staphylococcus condimenti
Strain Designation: F-2
Strain history: CIP <- 1998, C. Hertel, Univ. Hohenheim, Stuttgart, Germany: strain F-2 <- 1991, Tanasupawat
NCBI tax ID(s): 70255 (species)
General
@ref: 4438
BacDive-ID: 14632
DSM-Number: 11674
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped
description: Staphylococcus condimenti F-2 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soy sauce mash.
NCBI tax id
- NCBI tax id: 70255
- Matching level: species
strain history
@ref | history |
---|---|
4438 | <- A.J. Probst <- ? <- JCM <- Tanasupawat (Staphylococcus carnosus) <- T. Ueno, F-8 (Tetracoccus soyae) |
67770 | S. Tanasupawat F2. |
118723 | CIP <- 1998, C. Hertel, Univ. Hohenheim, Stuttgart, Germany: strain F-2 <- 1991, Tanasupawat |
doi: 10.13145/bacdive14632.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Staphylococcus
- species: Staphylococcus condimenti
- full scientific name: Staphylococcus condimenti Probst et al. 1998
@ref: 4438
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus condimenti
full scientific name: Staphylococcus condimenti Probst et al. 1998
strain designation: F-2
type strain: yes
Morphology
cell morphology
- @ref: 118723
- gram stain: positive
- cell shape: coccus-shaped
- motility: no
colony morphology
@ref | type of hemolysis |
---|---|
4438 | gamma |
118723 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4438 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
4438 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
38579 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
118723 | CIP Medium 29 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29 | |
118723 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
4438 | positive | growth | 37 | mesophilic |
38579 | positive | growth | 30 | mesophilic |
54986 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
118723 | positive | growth | 22-41 | |
118723 | no | growth | 10 | psychrophilic |
118723 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
54986 | aerobe |
118723 | facultative anaerobe |
observation
- @ref: 67770
- observation: quinones: MK-7
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | + | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
118723 | hippurate | - | hydrolysis | 606565 |
118723 | nitrate | + | reduction | 17632 |
118723 | nitrite | - | reduction | 16301 |
68375 | urea | + | hydrolysis | 16199 |
68375 | arginine | + | hydrolysis | 29016 |
68375 | ornithine | - | degradation | 18257 |
68375 | esculin | - | hydrolysis | 4853 |
68375 | D-glucose | + | fermentation | 17634 |
68375 | D-fructose | + | fermentation | 15824 |
68375 | D-mannose | + | fermentation | 16024 |
68375 | maltose | - | fermentation | 17306 |
68375 | lactose | + | fermentation | 17716 |
68375 | trehalose | + | fermentation | 27082 |
68375 | D-mannitol | + | fermentation | 16899 |
68375 | raffinose | - | fermentation | 16634 |
68375 | D-ribose | - | fermentation | 16988 |
68375 | cellobiose | - | fermentation | 17057 |
68375 | nitrate | + | reduction | 17632 |
68375 | sucrose | - | fermentation | 17992 |
68375 | N-acetylglucosamine | + | fermentation | 59640 |
68375 | turanose | - | fermentation | 32528 |
68375 | arabinose | - | fermentation | 22599 |
antibiotic resistance
- @ref: 68375
- ChEBI: 28368
- metabolite: novobiocin
- is antibiotic: yes
- is resistant: yes
- resistance conc.: 1.8 µg
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68375 | 15688 | acetoin | no |
118723 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test |
---|---|---|---|
68375 | 15688 | acetoin | - |
118723 | 15688 | acetoin | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68375 | beta-glucuronidase | - | 3.2.1.31 |
68375 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68375 | alkaline phosphatase | + | 3.1.3.1 |
68375 | L-arginine arylamidase | - | |
68375 | beta-galactosidase | + | 3.2.1.23 |
68375 | beta-glucosidase | - | 3.2.1.21 |
68375 | ornithine decarboxylase | - | 4.1.1.17 |
68375 | arginine dihydrolase | + | 3.5.3.6 |
68375 | urease | + | 3.5.1.5 |
118723 | oxidase | - | |
118723 | beta-galactosidase | + | 3.2.1.23 |
118723 | alcohol dehydrogenase | + | 1.1.1.1 |
118723 | gelatinase | - | |
118723 | amylase | - | |
118723 | DNase | + | |
118723 | caseinase | - | 3.4.21.50 |
118723 | catalase | + | 1.11.1.6 |
118723 | coagulase | - | |
118723 | tween esterase | + | |
118723 | gamma-glutamyltransferase | - | 2.3.2.2 |
118723 | lecithinase | + | |
118723 | lipase | - | |
118723 | lysine decarboxylase | - | 4.1.1.18 |
118723 | ornithine decarboxylase | - | 4.1.1.17 |
118723 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
118723 | protease | - | |
118723 | tryptophan deaminase | - | |
118723 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118723 | - | + | + | + | - | - | - | - | - | - | + | + | - | + | - | + | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118723 | +/- | - | - | - | + | - | - | - | - | +/- | + | + | + | - | - | - | - | + | + | - | - | + | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API ID32STA
@ref | URE | ADH Arg | ODC | ESC | GLU | FRU | MNE | MAL | LAC | TRE | MAN | RAF | RIB | CEL | NIT | VP | beta GAL | ArgA | PAL | PyrA | NOVO | SAC | NAG | TUR | ARA | beta GUR |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
4438 | + | + | - | - | + | + | + | - | + | + | + | - | - | - | + | - | + | - | + | - | + | - | + | - | - | - |
4438 | + | + | - | - | + | + | + | - | + | + | + | - | - | - | + | - | + | - | + | - | + | - | + | - | - | - |
4438 | + | + | - | - | + | + | + | - | + | + | + | - | - | - | + | - | + | - | + | - | + | - | + | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118723 | + | + | - | + | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | + | - | + | - | - | - | - | + | - | - | - | + | - | + | - | - | - | + | + | + | + | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | isolation date |
---|---|---|---|---|---|
4438 | soy sauce mash | Japan | JPN | Asia | |
54986 | Soy sauce mash | ||||
67770 | Soy-sauce mash | ||||
118723 | Food, Soy sauce mash | 1991 |
isolation source categories
- Cat1: #Engineered
- Cat2: #Food production
- Cat3: #Food
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
4438 | 1 | Risk group (German classification) |
118723 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Staphylococcus condimenti strain DSM 11674 16S ribosomal RNA gene, partial sequence | AY688048 | 464 | ena | 70255 |
4438 | Staphylococcus condimenti 16S rRNA gene, strain F-2 T, DSM 11674 T | Y15750 | 1545 | ena | 70255 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Staphylococcus condimenti DSM 11674 | GCA_001618885 | complete | ncbi | 70255 |
66792 | Staphylococcus condimenti NCTC13827 | GCA_900637235 | complete | ncbi | 70255 |
66792 | Staphylococcus condimenti strain DSM 11674 | 70255.17 | wgs | patric | 70255 |
66792 | Staphylococcus condimenti strain DSM 11674 | 70255.13 | complete | patric | 70255 |
66792 | Staphylococcus condimenti strain DSM 11674 | 70255.10 | wgs | patric | 70255 |
66792 | Staphylococcus condimenti strain FDAARGOS_1148 | 70255.23 | complete | patric | 70255 |
66792 | Staphylococcus condimenti strain NCTC13827 | 70255.18 | complete | patric | 70255 |
66792 | Staphylococcus condimenti DSM 11674 | 2645727505 | draft | img | 70255 |
66792 | Staphylococcus condimenti DSM 11674 | 2687453551 | complete | img | 70255 |
66792 | Staphylococcus condimenti DSM 11674 | 2917450786 | draft | img | 70255 |
67770 | Staphylococcus condimenti DSM 11674 | GCA_001014685 | contig | ncbi | 70255 |
67770 | Staphylococcus condimenti DSM 11674 | GCA_002902505 | scaffold | ncbi | 70255 |
GC content
- @ref: 67770
- GC-content: 35.2
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 85.601 | no |
gram-positive | yes | 88.994 | no |
anaerobic | no | 98.969 | yes |
aerobic | yes | 90.012 | no |
halophile | yes | 92.1 | no |
spore-forming | no | 92.133 | no |
glucose-util | yes | 88.334 | no |
motile | no | 86.011 | no |
thermophile | no | 99.749 | yes |
glucose-ferment | yes | 81.695 | no |
External links
@ref: 4438
culture collection no.: DSM 11674, JCM 6074, CCUG 39902, CCM 4753, CIP 105760, NCIMB 13559, NCTC 13827
straininfo link
- @ref: 83760
- straininfo: 49151
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 9734019 | Staphylococcus condimenti sp. nov., from soy sauce mash, and Staphylococcus carnosus (Schleifer and Fischer 1982) subsp. utilis subsp. nov. | Probst AJ, Hertel C, Richter L, Wassill L, Ludwig W, Hammes WP | Int J Syst Bacteriol | 10.1099/00207713-48-3-651 | 1998 | Base Sequence, Food Microbiology, Molecular Sequence Data, Oligonucleotide Probes, Phylogeny, *Soybeans, Staphylococcus/*classification/isolation & purification | Biotechnology |
Genetics | 27257207 | First Draft Genome Sequence of Staphylococcus condimenti F-2T. | Zheng B, Hu X, Jiang X, Li A, Yao J, Li L | Genome Announc | 10.1128/genomeA.00499-16 | 2016 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4438 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11674) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11674 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
38579 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17815 | ||||
54986 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 39902) | https://www.ccug.se/strain?id=39902 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68375 | Automatically annotated from API ID32STA | |||||
68382 | Automatically annotated from API zym | |||||
83760 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49151.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
118723 | Curators of the CIP | Collection of Institut Pasteur (CIP 105760) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105760 |