Strain identifier
version 8.1 (current version)
General
@ref: 50232
BacDive-ID: 146251
keywords: genome sequence, Bacteria, Gram-negative
description: Legionella pneumophila CCUG 30706 is a Gram-negative bacterium of the family Legionellaceae.
NCBI tax id
- NCBI tax id: 446
- Matching level: species
doi: 10.13145/bacdive146251.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Legionellales
- family: Legionellaceae
- genus: Legionella
- species: Legionella pneumophila
- full scientific name: Legionella pneumophila Brenner et al. 1979 (Approved Lists 1980)
@ref: 50232
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Legionellales
family: Legionellaceae
genus: Legionella
species: Legionella pneumophila
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.998
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.985 |
| 69481 | no | 100 |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Legionella pneumophila NCTC12179 | GCA_900635825 | complete | ncbi | 446 |
| 66792 | Legionella pneumophila strain NCTC12179 | 446.736 | complete | patric | 446 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 77.418 | no |
| gram-positive | no | 98.303 | no |
| anaerobic | no | 98.579 | no |
| aerobic | no | 89.404 | no |
| halophile | no | 87.512 | no |
| spore-forming | no | 94.29 | no |
| thermophile | no | 98.596 | no |
| glucose-util | yes | 66.896 | no |
| motile | yes | 77.771 | no |
| glucose-ferment | no | 86.204 | no |
External links
@ref: 50232
culture collection no.: CCUG 30706, NCTC 12179
straininfo link
- @ref: 101158
- straininfo: 55114
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 50232 | Curators of the CCUG | https://www.ccug.se/strain?id=30706 | Culture Collection University of Gothenburg (CCUG) (CCUG 30706) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 101158 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID55114.1 |