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Strain identifier

BacDive ID: 14617

Type strain: Yes

Species: Staphylococcus pasteuri

Strain Designation: BM9357

Strain history: <- CCM <- N. El Solh, BM9357

NCBI tax ID(s): 45972 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3996

BacDive-ID: 14617

DSM-Number: 10656

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Staphylococcus pasteuri BM9357 is a mesophilic bacterium that was isolated from human vomit.

NCBI tax id

  • NCBI tax id: 45972
  • Matching level: species

strain history: <- CCM <- N. El Solh, BM9357

doi: 10.13145/bacdive14617.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus pasteuri
  • full scientific name: Staphylococcus pasteuri Chesneau et al. 1993

@ref: 3996

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus pasteuri

full scientific name: Staphylococcus pasteuri Chesneau et al. 1993

strain designation: BM9357

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 93.807

colony morphology

  • @ref: 3996
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3996COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
3996TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
40704MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
3996positivegrowth37mesophilic
40704positivegrowth37mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 94.72

halophily

  • @ref: 69480
  • halophily level: halophilic
  • confidence: 96.733

murein

  • @ref: 3996
  • murein short key: A11.03
  • type: A3alpha L-Lys-Gly2-4-L-Ser1-2-Gly

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837522599arabinose-fermentation
6837559640N-acetylglucosamine-fermentation
6837517992sucrose+fermentation
6837517057cellobiose-fermentation
6837516988D-ribose-fermentation
6837516634raffinose-fermentation
6837516899D-mannitol+fermentation
6837527082trehalose+fermentation
6837517306maltose+fermentation
6837516024D-mannose-fermentation
6837515824D-fructose+fermentation
6837517634D-glucose+fermentation
683754853esculin-hydrolysis
6837518257ornithine-degradation
6837529016arginine+hydrolysis
6837516199urea+hydrolysis

antibiotic resistance

  • @ref: 68375
  • ChEBI: 28368
  • metabolite: novobiocin
  • is antibiotic: yes
  • is resistant: yes
  • resistance conc.: 1.8 µg

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
3996catalase+1.11.1.6
3996cytochrome-c oxidase-1.9.3.1
68375beta-glucuronidase+3.2.1.31
68375pyrrolidonyl arylamidase-3.4.19.3
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase+3.5.3.6
68375urease+3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
3996++--++-+-++----+--+/--++-+/--+
3996++--++-++/-++---++----++-+/--+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
3996human vomitFranceFRAEurope
51008Human vomit

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Vomit

Safety information

risk assessment

  • @ref: 3996
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Staphylococcus pasteuri 16S ribosomal RNA gene, partial sequenceAF0413611419ena45972
20218Staphylococcus pasteuri strain DSM 10656 16S ribosomal RNA gene, partial sequenceAY688082464ena45972
3996Staphylococcus pasteuri rrn gene for 16S ribosomal RNAAB0099441494ena45972

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus pasteuri DSM 10656GCA_003970495scaffoldncbi45972
66792Staphylococcus pasteuri strain DSM 1065645972.57wgspatric45972
66792Staphylococcus saccharolyticus strain FDAARGOS_1069 strain Not applicable33028.26completepatric33028
66792Staphylococcus pasteuri DSM 106562928989275draftimg45972

GC content

  • @ref: 3996
  • GC-content: 35
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 3996

culture collection no.: DSM 10656, ATCC 51129, CCM 4389, CCUG 32420

straininfo link

@refpassport
20218http://www.straininfo.net/strains/155399
20218http://www.straininfo.net/strains/115203
20218http://www.straininfo.net/strains/162099

literature

  • topic: Phylogeny
  • Pubmed-ID: 8098615
  • title: Staphylococcus pasteuri sp. nov., isolated from human, animal, and food specimens.
  • authors: Chesneau O, Morvan A, Grimont F, Labischinski H, el Solh N
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-43-2-237
  • year: 1993
  • mesh: Amino Acids/analysis, Animals, Bacterial Typing Techniques, Cell Wall/chemistry, DNA, Bacterial/classification/genetics, DNA, Ribosomal/classification/genetics, Food Microbiology, Humans, Microbial Sensitivity Tests, Novobiocin/pharmacology, Phenotype, Polymorphism, Restriction Fragment Length, Staphylococcus/*classification/drug effects/isolation & purification, Teichoic Acids/analysis
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3996Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10656)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10656
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40704Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15349
51008Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 32420)https://www.ccug.se/strain?id=32420
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68375Automatically annotated from API ID32STA
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)