Strain identifier

BacDive ID: 14607

Type strain: Yes

Species: Staphylococcus felis

Strain Designation: GD521, GD 521

Strain history: CIP <- 1989, JCM <- C. Igimi: strain GD 521

NCBI tax ID(s): 46127 (species)

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General

@ref: 3133

BacDive-ID: 14607

DSM-Number: 7377

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive, animal pathogen

description: Staphylococcus felis GD521 is a mesophilic, Gram-positive animal pathogen that was isolated from mass on the auricle in cat.

NCBI tax id

  • NCBI tax id: 46127
  • Matching level: species

strain history

@refhistory
3133<- JCM <- S. Igimi, SG521
67770S. Igimi GD 521.
119300CIP <- 1989, JCM <- C. Igimi: strain GD 521

doi: 10.13145/bacdive14607.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus felis
  • full scientific name: Staphylococcus felis Igimi et al. 1989

@ref: 3133

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus felis

full scientific name: Staphylococcus felis Igimi et al. 1989

strain designation: GD521, GD 521

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3133COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
3133TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
34250MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
119300CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
3133positivegrowth37mesophilic
34250positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.99

murein

  • @ref: 3133
  • murein short key: A11.02
  • type: A3alpha L-Lys-Gly5-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea+hydrolysis
6837529016arginine+hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose+fermentation
6837517306maltose-fermentation
6837517716lactose+fermentation
6837527082trehalose+fermentation
6837516899D-mannitol+fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose-fermentation
6837559640N-acetylglucosamine+fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68375beta-glucuronidase-3.2.1.31
68375pyrrolidonyl arylamidase+3.4.19.3
68375alkaline phosphatase+3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase+3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase+3.5.3.6
68375urease+3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
3133++--+++-+++---+-+-+++/--+---

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
3133mass on the auricle in cat
67770Mass on the auricle of a cat
119300Animal, Cat, mass on the auricleJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Felidae (Cat)
#Host Body-Site#Organ#Ear

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
3133yes2Risk group (German classification)
1193001Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Staphylococcus felis strain DSM 7377 16S ribosomal RNA gene, partial sequenceAY688057464ena46127
3133Staphylococcus felis gene for 16S rRNA, partial sequence, strain: ATCC 49168D833641475ena46127

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus felis ATCC 49168GCA_003012915completencbi46127
66792Staphylococcus felis strain ATCC 4916846127.8completepatric46127
66792Staphylococcus felis strain DSM 737746127.7wgspatric46127
66792Staphylococcus felis strain FDAARGOS_101446127.41completepatric46127
66792Staphylococcus felis DSM 73772917469366draftimg46127
66792Staphylococcus felis ATCC 491682802429259completeimg46127
67770Staphylococcus felis DSM 7377GCA_002902185scaffoldncbi46127

GC content

@refGC-contentmethod
313335.0thermal denaturation, midpoint method (Tm)
6777035.2thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno64no
flagellatedno92.245no
gram-positiveyes92.821no
anaerobicno99.051no
aerobicyes91.667no
halophileyes93.051no
spore-formingno88.785no
glucose-utilyes86.366no
thermophileno99.488yes
motileno90.809no
glucose-fermentyes82.158yes

External links

@ref: 3133

culture collection no.: DSM 7377, ATCC 49168, JCM 7469, CCM 4196, CCUG 32418, CCUG 38440, CIP 103366, NRRL B-14779

straininfo link

  • @ref: 83737
  • straininfo: 42334

literature

  • topic: Genetics
  • Pubmed-ID: 29773625
  • title: Complete Genome Sequences of the Potential Zoonotic Pathogens Staphylococcus felis and Staphylococcus kloosii.
  • authors: Mascarenhas Dos Santos AC, Jie R, Antunes Godoy H, Alves M, Pombert JF
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00404-18
  • year: 2018

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3133Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7377)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7377
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34250Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15155
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68375Automatically annotated from API ID32STA
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
83737Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42334.1StrainInfo: A central database for resolving microbial strain identifiers
119300Curators of the CIPCollection of Institut Pasteur (CIP 103366)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103366