Strain identifier
BacDive ID: 14607
Type strain:
Species: Staphylococcus felis
Strain Designation: GD521, GD 521
Strain history: CIP <- 1989, JCM <- C. Igimi: strain GD 521
NCBI tax ID(s): 46127 (species)
General
@ref: 3133
BacDive-ID: 14607
DSM-Number: 7377
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive, animal pathogen
description: Staphylococcus felis GD521 is a mesophilic, Gram-positive animal pathogen that was isolated from mass on the auricle in cat.
NCBI tax id
- NCBI tax id: 46127
- Matching level: species
strain history
@ref | history |
---|---|
3133 | <- JCM <- S. Igimi, SG521 |
67770 | S. Igimi GD 521. |
119300 | CIP <- 1989, JCM <- C. Igimi: strain GD 521 |
doi: 10.13145/bacdive14607.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Staphylococcus
- species: Staphylococcus felis
- full scientific name: Staphylococcus felis Igimi et al. 1989
@ref: 3133
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus felis
full scientific name: Staphylococcus felis Igimi et al. 1989
strain designation: GD521, GD 521
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3133 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
3133 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
34250 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
119300 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3133 | positive | growth | 37 | mesophilic |
34250 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 98.99
murein
- @ref: 3133
- murein short key: A11.02
- type: A3alpha L-Lys-Gly5-6
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68375 | 16199 | urea | + | hydrolysis |
68375 | 29016 | arginine | + | hydrolysis |
68375 | 18257 | ornithine | - | degradation |
68375 | 4853 | esculin | - | hydrolysis |
68375 | 17634 | D-glucose | + | fermentation |
68375 | 15824 | D-fructose | + | fermentation |
68375 | 16024 | D-mannose | + | fermentation |
68375 | 17306 | maltose | - | fermentation |
68375 | 17716 | lactose | + | fermentation |
68375 | 27082 | trehalose | + | fermentation |
68375 | 16899 | D-mannitol | + | fermentation |
68375 | 16634 | raffinose | - | fermentation |
68375 | 16988 | D-ribose | - | fermentation |
68375 | 17057 | cellobiose | - | fermentation |
68375 | 17632 | nitrate | + | reduction |
68375 | 17992 | sucrose | - | fermentation |
68375 | 59640 | N-acetylglucosamine | + | fermentation |
68375 | 32528 | turanose | - | fermentation |
68375 | 22599 | arabinose | - | fermentation |
metabolite production
- @ref: 68375
- Chebi-ID: 15688
- metabolite: acetoin
- production: no
metabolite tests
- @ref: 68375
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68375 | beta-glucuronidase | - | 3.2.1.31 |
68375 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68375 | alkaline phosphatase | + | 3.1.3.1 |
68375 | L-arginine arylamidase | - | |
68375 | beta-galactosidase | + | 3.2.1.23 |
68375 | beta-glucosidase | - | 3.2.1.21 |
68375 | ornithine decarboxylase | - | 4.1.1.17 |
68375 | arginine dihydrolase | + | 3.5.3.6 |
68375 | urease | + | 3.5.1.5 |
API ID32STA
@ref | URE | ADH Arg | ODC | ESC | GLU | FRU | MNE | MAL | LAC | TRE | MAN | RAF | RIB | CEL | NIT | VP | beta GAL | ArgA | PAL | PyrA | NOVO | SAC | NAG | TUR | ARA | beta GUR |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3133 | + | + | - | - | + | + | + | - | + | + | + | - | - | - | + | - | + | - | + | + | +/- | - | + | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
3133 | mass on the auricle in cat | |||
67770 | Mass on the auricle of a cat | |||
119300 | Animal, Cat, mass on the auricle | Japan | JPN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Felidae (Cat) |
#Host Body-Site | #Organ | #Ear |
Safety information
risk assessment
@ref | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|
3133 | yes | 2 | Risk group (German classification) |
119300 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Staphylococcus felis strain DSM 7377 16S ribosomal RNA gene, partial sequence | AY688057 | 464 | ena | 46127 |
3133 | Staphylococcus felis gene for 16S rRNA, partial sequence, strain: ATCC 49168 | D83364 | 1475 | ena | 46127 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Staphylococcus felis ATCC 49168 | GCA_003012915 | complete | ncbi | 46127 |
66792 | Staphylococcus felis strain ATCC 49168 | 46127.8 | complete | patric | 46127 |
66792 | Staphylococcus felis strain DSM 7377 | 46127.7 | wgs | patric | 46127 |
66792 | Staphylococcus felis strain FDAARGOS_1014 | 46127.41 | complete | patric | 46127 |
66792 | Staphylococcus felis DSM 7377 | 2917469366 | draft | img | 46127 |
66792 | Staphylococcus felis ATCC 49168 | 2802429259 | complete | img | 46127 |
67770 | Staphylococcus felis DSM 7377 | GCA_002902185 | scaffold | ncbi | 46127 |
GC content
@ref | GC-content | method |
---|---|---|
3133 | 35.0 | thermal denaturation, midpoint method (Tm) |
67770 | 35.2 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 64 | no |
flagellated | no | 92.245 | no |
gram-positive | yes | 92.821 | no |
anaerobic | no | 99.051 | no |
aerobic | yes | 91.667 | no |
halophile | yes | 93.051 | no |
spore-forming | no | 88.785 | no |
glucose-util | yes | 86.366 | no |
thermophile | no | 99.488 | yes |
motile | no | 90.809 | no |
glucose-ferment | yes | 82.158 | yes |
External links
@ref: 3133
culture collection no.: DSM 7377, ATCC 49168, JCM 7469, CCM 4196, CCUG 32418, CCUG 38440, CIP 103366, NRRL B-14779
straininfo link
- @ref: 83737
- straininfo: 42334
literature
- topic: Genetics
- Pubmed-ID: 29773625
- title: Complete Genome Sequences of the Potential Zoonotic Pathogens Staphylococcus felis and Staphylococcus kloosii.
- authors: Mascarenhas Dos Santos AC, Jie R, Antunes Godoy H, Alves M, Pombert JF
- journal: Genome Announc
- DOI: 10.1128/genomeA.00404-18
- year: 2018
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3133 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7377) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7377 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
34250 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15155 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68375 | Automatically annotated from API ID32STA | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
83737 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42334.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119300 | Curators of the CIP | Collection of Institut Pasteur (CIP 103366) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103366 |