Strain identifier

BacDive ID: 14605

Type strain: Yes

Species: Staphylococcus muscae

Strain Designation: MB4

Strain history: CIP <- 1993, V. Hajek, Palacky Univ., Olomouc, Czech Republic: strain MB4

NCBI tax ID(s): 1294 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2969

BacDive-ID: 14605

DSM-Number: 7068

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped

description: Staphylococcus muscae MB4 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from fly, body surface.

NCBI tax id

  • NCBI tax id: 1294
  • Matching level: species

strain history

@refhistory
2969<- CCM <- V. Hajek, MB4
407491993, V. Hajek, Inst. Med. Microbiol., Olomouc, Czechoslovakia: strain MB4
121204CIP <- 1993, V. Hajek, Palacky Univ., Olomouc, Czech Republic: strain MB4

doi: 10.13145/bacdive14605.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus muscae
  • full scientific name: Staphylococcus muscae Hájek et al. 1992

@ref: 2969

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus muscae

full scientific name: Staphylococcus muscae Hájek et al. 1992

strain designation: MB4

type strain: yes

Morphology

cell morphology

  • @ref: 121204
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

@reftype of hemolysishemolysis ability
2969beta1
1212041

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2969COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
2969TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
40749MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
121204CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
2969positivegrowth37mesophilic
40749positivegrowth37mesophilic
53517positivegrowth37mesophilic
121204positivegrowth37mesophilic
121204nogrowth15psychrophilic
121204nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
53517aerobe
121204facultative anaerobe

murein

  • @ref: 2969
  • murein short key: A11.02
  • type: A3alpha L-Lys-Gly5-6

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
121204nitrate+reduction17632
121204nitrite-reduction16301
121204tributyrin-hydrolysis35020
68375arginine-hydrolysis29016
68375ornithine-degradation18257
68375esculin-hydrolysis4853
68375D-mannose-fermentation16024
68375maltose-fermentation17306
68375raffinose-fermentation16634
68375D-ribose-fermentation16988
68375cellobiose-fermentation17057
68375nitrate+reduction17632
68375turanose-fermentation32528
68375arabinose-fermentation22599

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistant
6837528368novobiocinyesyes1.8 µg
1212040129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesnoyes

metabolite production

@refChebi-IDmetaboliteproduction
6837515688acetoinno
12120435581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6837515688acetoin-
12120415688acetoin-

enzymes

@refvalueactivityec
68375beta-glucuronidase+3.2.1.31
68375pyrrolidonyl arylamidase-3.4.19.3
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase-3.5.3.6
121204oxidase-
121204beta-galactosidase-3.2.1.23
121204alcohol dehydrogenase-1.1.1.1
121204gelatinase-
121204DNase+/-
121204catalase+1.11.1.6
121204coagulase-
121204tween esterase+
121204lecithinase+
121204lysine decarboxylase-4.1.1.18
121204ornithine decarboxylase-4.1.1.17
121204urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121204+----+----++---------+--------++--------------+--

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
2969----+/-+/----+/-----+---+--+/-+/---+
2969+---++--+/-++---+---+/---+/-+--+
2969----++---+/-----+------+/-+/---+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
2969fly, body surfaceCzech RepublicCZEEurope
53517Fly body surface (Stomoxys calcitrans)Czech RepublicCZEEuropeOlomouc
121204Other, Flies trapped in cow shedsCzech RepublicCZEEurope

isolation source categories

  • Cat1: #Host
  • Cat2: #Arthropoda
  • Cat3: #Insecta

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
29691Risk group (German classification)
1212041Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Staphylococcus muscae strain DSM 7068 16S ribosomal RNA gene, partial sequenceAY688079464ena1294
2969Staphylococcus muscae partial 16S rRNA gene, type strain DSM7068TFR7337031537ena1294

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus muscae ATCC 49910GCA_003019275completencbi1294
66792Staphylococcus muscae CCM 4175GCA_014634965scaffoldncbi1294
66792Staphylococcus muscae DSM 7068GCA_002901905scaffoldncbi1294
66792Staphylococcus muscae strain ATCC 499101294.8completepatric1294
66792Staphylococcus muscae strain CCM 41751294.9wgspatric1294
66792Staphylococcus muscae strain DSM 70681294.7wgspatric1294
66792Staphylococcus muscae DSM 70682917496769draftimg1294

GC content

  • @ref: 2969
  • GC-content: 41.0
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno94.383no
gram-positiveyes93.773no
anaerobicno98.489yes
halophileyes95.774no
spore-formingno91.192no
glucose-utilyes86.657no
aerobicyes88.51yes
thermophileno99.664yes
motileno90.862no
glucose-fermentyes85.029no

External links

@ref: 2969

culture collection no.: DSM 7068, ATCC 49910, CCM 4175, CCUG 36972, CIP 103641

straininfo link

  • @ref: 83735
  • straininfo: 42748

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny1371067Staphylococcus muscae, a new species isolated from flies.Hajek V, Ludwig W, Schleifer KH, Springer N, Zitzelsberger W, Kroppenstedt RM, Kocur MInt J Syst Bacteriol10.1099/00207713-42-1-971992Animals, Base Sequence, Diptera/*microbiology, Molecular Sequence Data, RNA, Bacterial/chemistry, RNA, Ribosomal, 16S/chemistry, Staphylococcus/classification/genetics/*isolation & purificationGenetics
Phylogeny19819995Staphylococcus rostri sp. nov., a haemolytic bacterium isolated from the noses of healthy pigs.Riesen A, Perreten VInt J Syst Evol Microbiol10.1099/ijs.0.012443-02009Animals, Bacterial Proteins/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Hemolysin Proteins/metabolism, Hemolysis, Molecular Sequence Data, Nose/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Staphylococcus/*classification/genetics/*isolation & purification/metabolism, Sus scrofa/*microbiology, SwitzerlandMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2969Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7068)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7068
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40749Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15461
53517Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 36972)https://www.ccug.se/strain?id=36972
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68375Automatically annotated from API ID32STA
83735Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42748.1StrainInfo: A central database for resolving microbial strain identifiers
121204Curators of the CIPCollection of Institut Pasteur (CIP 103641)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103641