Workshop and Q&A October 6th

Strain identifier

BacDive ID: 146025

Type strain: No

Species: Pannonibacter phragmitetus

NCBI tax ID(s): 121719 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 49957

BacDive-ID: 146025

keywords: Bacteria

description: Pannonibacter phragmitetus CCUG 30180 is a bacterium that was isolated from Human blood,newborn.

NCBI tax id

  • NCBI tax id: 121719
  • Matching level: species

doi: 10.13145/bacdive146025.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Stappiaceae
  • genus: Pannonibacter
  • species: Pannonibacter phragmitetus
  • full scientific name: Pannonibacter phragmitetus Borsodi et al. 2003

@ref: 49957

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Rhodobacteraceae

genus: Pannonibacter

species: Pannonibacter phragmitetus

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    49957C16:04.816
    49957C17:04.217
    49957C18:02.518
    49957C14:0 3OH/C16:1 ISO I1.915.485
    49957C17:1 ω6c116.862
    49957C18:1 ω7c /12t/9t83.717.824
    49957Unidentified1.9
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
49957-------+++++-+---++-+

Isolation, sampling and environmental information

isolation

  • @ref: 49957
  • sample type: Human blood,newborn
  • sampling date: 1992-05-10
  • geographic location: Umeå
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood
#Infection#Patient
#Host#Human#Child

External links

@ref: 49957

culture collection no.: CCUG 30180

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
49957Curators of the CCUGhttps://www.ccug.se/strain?id=30180Culture Collection University of Gothenburg (CCUG) (CCUG 30180)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68369Automatically annotated from API 20NE