Strain identifier

BacDive ID: 14564

Type strain: No

Species: Staphylococcus lugdunensis

Strain Designation: N860314

Strain history: <- J. Fleurette <- Centre National des Staphylocoques, Lyon N860314

NCBI tax ID(s): 28035 (species)

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General

@ref: 1829

BacDive-ID: 14564

DSM-Number: 4806

keywords: Bacteria, mesophilic

description: Staphylococcus lugdunensis N860314 is a mesophilic bacterium that was isolated from abscess drain.

NCBI tax id

  • NCBI tax id: 28035
  • Matching level: species

strain history

  • @ref: 1829
  • history: <- J. Fleurette <- Centre National des Staphylocoques, Lyon N860314

doi: 10.13145/bacdive14564.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus lugdunensis
  • full scientific name: Staphylococcus lugdunensis Freney et al. 1988

@ref: 1829

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus lugdunensis

full scientific name: Staphylococcus lugdunensis Freney et al. 1988

strain designation: N860314

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1829TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
1829COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 1829
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

murein

  • @ref: 1829
  • murein short key: A11.02
  • type: A3alpha L-Lys-Gly5-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea+hydrolysis
6837529016arginine-hydrolysis
6837518257ornithine+degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose+fermentation
6837517306maltose+fermentation
6837517716lactose+fermentation
6837527082trehalose+fermentation
6837516899D-mannitol-fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose+fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine+fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68375beta-glucuronidase-3.2.1.31
68375pyrrolidonyl arylamidase+3.4.19.3
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase+4.1.1.17
68375arginine dihydrolase-3.5.3.6
68375urease+3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
1829+-+-++++++---+++--+/-++/-++---

Isolation, sampling and environmental information

isolation

  • @ref: 1829
  • sample type: abscess drain

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Other
  • Cat3: #Abscess

Safety information

risk assessment

  • @ref: 1829
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

GC content

  • @ref: 1829
  • GC-content: 32.0

External links

@ref: 1829

culture collection no.: DSM 4806

straininfo link

  • @ref: 83694
  • straininfo: 47869

Reference

@idauthorscataloguedoi/urltitle
1829Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4806)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4806
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68375Automatically annotated from API ID32STA
83694Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47869.1StrainInfo: A central database for resolving microbial strain identifiers