Strain identifier
BacDive ID: 1456
Type strain:
Species: Parageobacillus galactosidasius
Strain Designation: CF1B
Strain history: <- A. Poli; CF1B
NCBI tax ID(s): 883812 (species)
General
@ref: 7684
BacDive-ID: 1456
DSM-Number: 18751
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, thermophilic, motile
description: Parageobacillus galactosidasius CF1B is a spore-forming, thermophilic, motile bacterium that was isolated from compost.
NCBI tax id
- NCBI tax id: 883812
- Matching level: species
strain history
- @ref: 7684
- history: <- A. Poli; CF1B
doi: 10.13145/bacdive1456.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Parageobacillus
- species: Parageobacillus galactosidasius
- full scientific name: Parageobacillus galactosidasius (Poli et al. 2012) Najar et al. 2020
synonyms
- @ref: 20215
- synonym: Geobacillus galactosidasius
@ref: 7684
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Parageobacillus
species: Parageobacillus galactosidasius
full scientific name: Parageobacillus galactosidasius (Poli et al. 2012) Najar et al. 2020
strain designation: CF1B
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 95.391 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 7684
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range | confidence |
---|---|---|---|---|---|
7684 | positive | growth | 60 | thermophilic | |
69480 | thermophilic | 99.999 |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
compound production
- @ref: 7684
- compound: ß galactosidase
Isolation, sampling and environmental information
isolation
- @ref: 7684
- sample type: compost
- geographic location: Teora, Avellino
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Biodegradation
- Cat3: #Composting
Safety information
risk assessment
- @ref: 7684
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7684
- description: Geobacillus galactosidasius partial 16S rRNA gene, type strain CF1BT
- accession: AM408559
- length: 1426
- database: ena
- NCBI tax ID: 883812
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Parageobacillus galactosidasius DSM 18751 | GCA_002217735 | contig | ncbi | 883812 |
66792 | Geobacillus galactosidasius strain DSM 18751 | 883812.5 | wgs | patric | 883812 |
GC content
- @ref: 7684
- GC-content: 53.5
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 87.21 | no |
flagellated | yes | 82.944 | no |
gram-positive | yes | 87.374 | no |
anaerobic | no | 95.537 | no |
halophile | no | 94.368 | no |
spore-forming | yes | 96.945 | no |
thermophile | yes | 99.502 | yes |
glucose-util | yes | 90.417 | no |
aerobic | yes | 79.307 | no |
glucose-ferment | no | 90.034 | no |
External links
@ref: 7684
culture collection no.: DSM 18751, ATCC BAA 1450
straininfo link
- @ref: 71103
- straininfo: 403228
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 21645983 | Geobacillus galactosidasius sp. nov., a new thermophilic galactosidase-producing bacterium isolated from compost. | Poli A, Laezza G, Gul-Guven R, Orlando P, Nicolaus B | Syst Appl Microbiol | 10.1016/j.syapm.2011.03.009 | 2011 | DNA, Bacterial/genetics, Galactosidases/*biosynthesis, Genes, Bacterial, Genetic Variation, Geobacillus/*classification/enzymology/genetics, Italy, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil, *Soil Microbiology, Temperature | Genetics |
29483968 | High Quality Draft Genomes of the Type Strains Geobacillus thermocatenulatus DSM 730(T), G. uzenensis DSM 23175(T) And Parageobacillus galactosidasius DSM 18751(T). | Ramaloko WT, Koen N, Polliack S, Aliyu H, Lebre PH, Mohr T, Oswald F, Zwick M, Zeigler DR, Neumann A, Syldatk C, Cowan DA, De Maayer P | J Genomics | 10.7150/jgen.22986 | 2018 | |||
34829688 | Improving Aqueous Solubility of Natural Antioxidant Mangiferin through Glycosylation by Maltogenic Amylase from Parageobacillus galactosidasius DSM 18751. | Wu JY, Ding HY, Wang TY, Tsai YL, Ting HJ, Chang TS | Antioxidants (Basel) | 10.3390/antiox10111817 | 2021 |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
7684 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18751) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18751 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
71103 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID403228.1 | StrainInfo: A central database for resolving microbial strain identifiers |