Strain identifier

BacDive ID: 1456

Type strain: Yes

Species: Parageobacillus galactosidasius

Strain Designation: CF1B

Strain history: <- A. Poli; CF1B

NCBI tax ID(s): 883812 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7684

BacDive-ID: 1456

DSM-Number: 18751

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, thermophilic, motile

description: Parageobacillus galactosidasius CF1B is a spore-forming, thermophilic, motile bacterium that was isolated from compost.

NCBI tax id

  • NCBI tax id: 883812
  • Matching level: species

strain history

  • @ref: 7684
  • history: <- A. Poli; CF1B

doi: 10.13145/bacdive1456.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Parageobacillus
  • species: Parageobacillus galactosidasius
  • full scientific name: Parageobacillus galactosidasius (Poli et al. 2012) Najar et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Geobacillus galactosidasius

@ref: 7684

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Parageobacillus

species: Parageobacillus galactosidasius

full scientific name: Parageobacillus galactosidasius (Poli et al. 2012) Najar et al. 2020

strain designation: CF1B

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes95.391
69480100positive

Culture and growth conditions

culture medium

  • @ref: 7684
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerangeconfidence
7684positivegrowth60thermophilic
69480thermophilic99.999

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

  • @ref: 7684
  • compound: ß galactosidase

Isolation, sampling and environmental information

isolation

  • @ref: 7684
  • sample type: compost
  • geographic location: Teora, Avellino
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Biodegradation
  • Cat3: #Composting

Safety information

risk assessment

  • @ref: 7684
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7684
  • description: Geobacillus galactosidasius partial 16S rRNA gene, type strain CF1BT
  • accession: AM408559
  • length: 1426
  • database: ena
  • NCBI tax ID: 883812

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Parageobacillus galactosidasius DSM 18751GCA_002217735contigncbi883812
66792Geobacillus galactosidasius strain DSM 18751883812.5wgspatric883812

GC content

  • @ref: 7684
  • GC-content: 53.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileyes87.21no
flagellatedyes82.944no
gram-positiveyes87.374no
anaerobicno95.537no
halophileno94.368no
spore-formingyes96.945no
thermophileyes99.502yes
glucose-utilyes90.417no
aerobicyes79.307no
glucose-fermentno90.034no

External links

@ref: 7684

culture collection no.: DSM 18751, ATCC BAA 1450

straininfo link

  • @ref: 71103
  • straininfo: 403228

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21645983Geobacillus galactosidasius sp. nov., a new thermophilic galactosidase-producing bacterium isolated from compost.Poli A, Laezza G, Gul-Guven R, Orlando P, Nicolaus BSyst Appl Microbiol10.1016/j.syapm.2011.03.0092011DNA, Bacterial/genetics, Galactosidases/*biosynthesis, Genes, Bacterial, Genetic Variation, Geobacillus/*classification/enzymology/genetics, Italy, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil, *Soil Microbiology, TemperatureGenetics
29483968High Quality Draft Genomes of the Type Strains Geobacillus thermocatenulatus DSM 730(T), G. uzenensis DSM 23175(T) And Parageobacillus galactosidasius DSM 18751(T).Ramaloko WT, Koen N, Polliack S, Aliyu H, Lebre PH, Mohr T, Oswald F, Zwick M, Zeigler DR, Neumann A, Syldatk C, Cowan DA, De Maayer PJ Genomics10.7150/jgen.229862018
34829688Improving Aqueous Solubility of Natural Antioxidant Mangiferin through Glycosylation by Maltogenic Amylase from Parageobacillus galactosidasius DSM 18751.Wu JY, Ding HY, Wang TY, Tsai YL, Ting HJ, Chang TSAntioxidants (Basel)10.3390/antiox101118172021

Reference

@idauthorscataloguedoi/urltitle
7684Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18751)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18751
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71103Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403228.1StrainInfo: A central database for resolving microbial strain identifiers