Strain identifier

BacDive ID: 14542

Type strain: Yes

Species: Staphylococcus gallinarum

Strain history: CIP <- 1992, L. Devriese, Ghent Univ., Ghent, Belgium: strain VIII 1

NCBI tax ID(s): 1293 (species)

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General

@ref: 8958

BacDive-ID: 14542

DSM-Number: 20610

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, coccus-shaped

description: Staphylococcus gallinarum DSM 20610 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from skin of chicken.

NCBI tax id

  • NCBI tax id: 1293
  • Matching level: species

strain history

@refhistory
8958<- K.H. Schleifer <- L.A. Devriese, VIII1
406791992, L. Devriese, Med. Vet. Univ., Gent, Belgium: strain VIII 1
119517CIP <- 1992, L. Devriese, Ghent Univ., Ghent, Belgium: strain VIII 1

doi: 10.13145/bacdive14542.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus gallinarum
  • full scientific name: Staphylococcus gallinarum Devriese et al. 1983

@ref: 8958

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus gallinarum

full scientific name: Staphylococcus gallinarum Devriese et al. 1983

type strain: yes

Morphology

cell morphology

  • @ref: 119517
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

@reftype of hemolysisincubation period
8958gamma1-2 days
119517

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8958COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8958TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
40679MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
119517CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
119517CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
8958positivegrowth37mesophilic
40679positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119517
  • oxygen tolerance: obligate aerobe

murein

  • @ref: 8958
  • murein short key: A11.03
  • type: A3alpha L-Lys-Gly2-4-L-Ser1-2-Gly

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
119517nitrate+reduction17632
119517nitrite-reduction16301
119517tributyrin-hydrolysis35020
68375urea+hydrolysis16199
68375arginine-hydrolysis29016
68375ornithine-degradation18257
68375esculin+hydrolysis4853
68375D-glucose+fermentation17634
68375D-fructose+fermentation15824
68375D-mannose+fermentation16024
68375maltose+fermentation17306
68375lactose+fermentation17716
68375D-mannitol+fermentation16899
68375raffinose+fermentation16634
68375D-ribose-fermentation16988
68375cellobiose+fermentation17057
68375nitrate+reduction17632
68375sucrose+fermentation17992
68375N-acetylglucosamine+fermentation59640
68375turanose+fermentation32528
68375arabinose+fermentation22599

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitive
6837528368novobiocinyesyes1.8 µg
1195170129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesyesno

metabolite production

@refChebi-IDmetaboliteproduction
6837515688acetoinno
11951735581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6837515688acetoin-
11951715688acetoin-

enzymes

@refvalueactivityec
8958catalase+1.11.1.6
8958cytochrome-c oxidase-1.9.3.1
68375beta-glucuronidase+3.2.1.31
68375alkaline phosphatase+3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase+3.2.1.23
68375beta-glucosidase+3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase-3.5.3.6
68375urease+3.5.1.5
119517oxidase-
119517beta-galactosidase+3.2.1.23
119517alcohol dehydrogenase-1.1.1.1
119517gelatinase-
119517DNase-
119517catalase+1.11.1.6
119517coagulase-
119517lysine decarboxylase-4.1.1.18
119517ornithine decarboxylase-4.1.1.17
119517urease+3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119517+/---++/-+/----+/-+++-+/---++--++/-+++++++/-+---+/----++/----------

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
8958+--+++++++++-++-+-++/-++++++
8958+--+++++++++-++-+-++/-++++++
8958+--++++++-++-++-+-+-++++++
8958+--+++++++++-++-+-+-++++++

Isolation, sampling and environmental information

isolation

@refsample typesampling datecountryorigin.countrycontinent
8958skin of chicken
46287Skin of chicken1983-05-18
119517Animal, Chicken, naresBelgiumBELEurope

isolation source categories

Cat1Cat2Cat3
#Host#Birds#Chicken
#Host Body-Site#Organ#Skin, Nail, Hair

taxonmaps

  • @ref: 69479
  • File name: preview.99_63.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3;97_3;98_3;99_63&stattab=map
  • Last taxonomy: Staphylococcus
  • 16S sequence: D83366
  • Sequence Identity:
  • Total samples: 26921
  • soil counts: 930
  • aquatic counts: 1554
  • animal counts: 23674
  • plant counts: 763

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
89581Risk group (German classification)
1195171Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Staphylococcus gallinarum strain DSM 20610 16S ribosomal RNA gene, partial sequenceAY688059464ena1293
8958Staphylococcus gallinarum gene for 16S rRNA, partial sequence, strain: ATCC 35539D833661477ena1293

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus gallinarum DSM 20610GCA_000875895contigncbi1293
66792Staphylococcus gallinarum strain DSM 206101293.6wgspatric1293

GC content

  • @ref: 8958
  • GC-content: 34.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno87.081no
gram-positiveyes90.931no
anaerobicno99.374no
aerobicyes90.923no
halophileyes91.371no
spore-formingno88.097no
glucose-utilyes91.023no
flagellatedno87.248no
thermophileno99.883no
glucose-fermentyes83.126yes

External links

@ref: 8958

culture collection no.: DSM 20610, ATCC 35539, CCM 3572, CCUG 15600, VIII 1, CIP 103504, GIFU 10758

straininfo link

  • @ref: 83673
  • straininfo: 13065

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny14657137Staphylococcus nepalensis sp. nov., isolated from goats of the Himalayan region.Spergser J, Wieser M, Taubel M, Rossello-Mora RA, Rosengarten R, Busse HJInt J Syst Evol Microbiol10.1099/ijs.0.02646-02003Altitude, Animals, DNA Fingerprinting, Geography, Goats/*microbiology, India, Microbial Sensitivity Tests, Molecular Sequence Data, *Phylogeny, Polymerase Chain Reaction, Staphylococcus/*classification/genetics/isolation & purification/physiologyGenetics
Genetics26044428Draft Genome Sequence of Staphylococcus gallinarum DSM 20610T, Originally Isolated from the Skin of a Chicken.Shi D, Fang D, Hu X, Li A, Lv L, Guo J, Chen Y, Wu W, Guo F, Li LGenome Announc10.1128/genomeA.00580-152015Phylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8958Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20610)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20610
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40679Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15308
46287Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 15600)https://www.ccug.se/strain?id=15600
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68375Automatically annotated from API ID32STA
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83673Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13065.1StrainInfo: A central database for resolving microbial strain identifiers
119517Curators of the CIPCollection of Institut Pasteur (CIP 103504)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103504