Strain identifier
BacDive ID: 1454
Type strain: 
Species: Geobacillus zalihae
Strain Designation: T1
Strain history: <- Leow, Thean Chor; T1
NCBI tax ID(s): 1220596 (strain), 213419 (species)
version 8.1 (current version)
General
@ref: 7501
BacDive-ID: 1454
DSM-Number: 18318
keywords: genome sequence, 16S sequence, Bacteria, thermophilic
description: Geobacillus zalihae T1 is a thermophilic bacterium that was isolated from palm oil mill effluent.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1220596 | strain |
| 213419 | species |
strain history
- @ref: 7501
- history: <- Leow, Thean Chor; T1
doi: 10.13145/bacdive1454.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Geobacillus
- species: Geobacillus zalihae
- full scientific name: Geobacillus zalihae Abd Rahman et al. 2007
@ref: 7501
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Geobacillus
species: Geobacillus zalihae
full scientific name: Geobacillus zalihae Abd Rahman et al. 2007
strain designation: T1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7501
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 7501
- growth: positive
- type: growth
- temperature: 55
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 7501
- sample type: palm oil mill effluent
- geographic location: Semenyih, Selangor
- country: Malaysia
- origin.country: MYS
- continent: Asia
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Industrial wastewater
taxonmaps
- @ref: 69479
- File name: preview.99_1030.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_79;96_191;97_207;98_231;99_1030&stattab=map
- Last taxonomy: Geobacillus
- 16S sequence: AY166603
- Sequence Identity:
- Total samples: 3714
- soil counts: 485
- aquatic counts: 635
- animal counts: 2412
- plant counts: 182
Sequence information
16S sequences
- @ref: 7501
- description: Geobacillus zalihae strain T1 16S ribosomal RNA gene, complete sequence
- accession: AY166603
- length: 1519
- database: ena
- NCBI tax ID: 213419
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Geobacillus zalihae NBRC 101842 | GCA_001544135 | contig | ncbi | 1220596 |
| 66792 | Geobacillus zalihae NBRC 101842 | 1220596.5 | wgs | patric | 1220596 |
| 66792 | Geobacillus zalihae NBRC 101842 | 2731957561 | draft | img | 1220596 |
GC content
- @ref: 7501
- GC-content: 52.6
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 89.04 | no |
| gram-positive | yes | 91.766 | no |
| anaerobic | no | 97.885 | no |
| aerobic | yes | 90.491 | no |
| halophile | no | 93.341 | no |
| spore-forming | yes | 97.093 | no |
| glucose-util | yes | 89.276 | no |
| flagellated | yes | 85.917 | no |
| thermophile | yes | 99.726 | yes |
| glucose-ferment | no | 90.555 | no |
External links
@ref: 7501
culture collection no.: DSM 18318, NBRC 101842
literature
- topic: Phylogeny
- Pubmed-ID: 17692114
- title: Geobacillus zalihae sp. nov., a thermophilic lipolytic bacterium isolated from palm oil mill effluent in Malaysia.
- authors: Abd Rahman RN, Leow TC, Salleh AB, Basri M
- journal: BMC Microbiol
- DOI: 10.1186/1471-2180-7-77
- year: 2007
- mesh: Bacillaceae/classification/genetics/*isolation & purification/*metabolism, Base Sequence, Fatty Acids/*analysis, Lipase/*isolation & purification, Malaysia, Molecular Sequence Data, Palm Oil, Phylogeny, Plant Oils, Sequence Alignment
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7501 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18318) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18318 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |