Strain identifier

BacDive ID: 14528

Type strain: No

Species: Staphylococcus epidermidis

Strain history: 1955, A. Castellani, Micrococcus violagabriellae

NCBI tax ID(s): 1282 (species)

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General

@ref: 8448

BacDive-ID: 14528

DSM-Number: 20042

keywords: Bacteria, mesophilic, human pathogen

description: Staphylococcus epidermidis DSM 20042 is a mesophilic human pathogen that was isolated from tropical superficial axillary dermatitis.

NCBI tax id

  • NCBI tax id: 1282
  • Matching level: species

strain history

@refhistory
8448<- CCM; CCM 50 <- NCTC; NCTC 9865 <- Q. Castellani; (Micrococcus violagabriellae)
349951955, A. Castellani, Micrococcus violagabriellae

doi: 10.13145/bacdive14528.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus epidermidis
  • full scientific name: Staphylococcus epidermidis (Winslow and Winslow 1908) Evans 1916 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Albococcus epidermidis

@ref: 8448

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus epidermidis

full scientific name: Staphylococcus epidermidis (Winslow and Winslow 1908) Evans 1916

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8448TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
34995MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
8448COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf

culture temp

@refgrowthtypetemperaturerange
8448positivegrowth37mesophilic
34995positivegrowth37mesophilic

Physiology and metabolism

antibiogram

  • @ref: 8448
  • medium: Mueller-Hinton Agar
  • incubation temperature: 37
  • Penicillin G: 50
  • oxacillin: 40
  • ampicillin: 46
  • ticarcillin: >50
  • mezlocillin: 42
  • cefalotin: 48
  • cefazolin: 42-44
  • cefotaxime: 36
  • aztreonam: 0
  • imipenem: >50
  • tetracycline: 0
  • chloramphenicol: 36
  • gentamycin: 30-32
  • amikacin: 30
  • vancomycin: 22
  • erythromycin: 34-36
  • lincomycin: 34
  • ofloxacin: 32
  • norfloxacin: 34-36
  • colistin: 10
  • pipemidic acid: 20-22
  • nitrofurantoin: 30
  • bacitracin: 18
  • polymyxin b: 12-14
  • kanamycin: 30-32
  • neomycin: 26-28
  • doxycycline: 10-12
  • ceftriaxone: n.d.
  • clindamycin: n.d.
  • fosfomycin: n.d.
  • moxifloxacin: n.d.
  • linezolid: n.d.
  • nystatin: n.d.
  • quinupristin/dalfopristin: n.d.
  • teicoplanin: n.d.
  • piperacillin/tazobactam: n.d.

murein

  • @ref: 8448
  • murein short key: A11.03
  • type: A3alpha L-Lys-Gly2-4-L-Ser1-2-Gly

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea+hydrolysis
6837529016arginine+hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837517306maltose+fermentation
6837517716lactose-fermentation
6837527082trehalose-fermentation
6837516899D-mannitol-fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine-fermentation
6837532528turanose+fermentation
6837522599arabinose-fermentation

antibiotic resistance

  • @ref: 68375
  • ChEBI: 28368
  • metabolite: novobiocin
  • is antibiotic: yes
  • is sensitive: yes
  • sensitivity conc.: 1.8 µg

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68375beta-glucuronidase-3.2.1.31
68375pyrrolidonyl arylamidase-3.4.19.3
68375alkaline phosphatase+3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase+3.5.3.6
68375urease+3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
8448++--++++------++--+--+-+--
8448++--++-+------++--+--+-+--
8448++--++++------++--+--+-+--

Isolation, sampling and environmental information

isolation

  • @ref: 8448
  • sample type: tropical superficial axillary dermatitis

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Host Body-Site#Organ#Skin, Nail, Hair

Safety information

risk assessment

  • @ref: 8448
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

GC content

  • @ref: 8448
  • GC-content: 30.0

External links

@ref: 8448

culture collection no.: DSM 20042, CCM 50, NCTC 9865

straininfo link

  • @ref: 83659
  • straininfo: 49568

literature

  • topic: Pathogenicity
  • Pubmed-ID: 16406139
  • title: Infection risk associated with a closed luer access device.
  • authors: Adams D, Karpanen T, Worthington T, Lambert P, Elliott TS
  • journal: J Hosp Infect
  • DOI: 10.1016/j.jhin.2005.09.016
  • year: 2006
  • mesh: 2-Propanol, Catheterization/adverse effects/*instrumentation, *Decontamination, Disinfectants, Drug Contamination, *Equipment Contamination, Equipment Design, Equipment and Supplies/microbiology, Humans, In Vitro Techniques, Risk, Staphylococcus epidermidis/isolation & purification
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitle
8448Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20042)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20042
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
34995Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8533
68375Automatically annotated from API ID32STA
83659Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49568.1StrainInfo: A central database for resolving microbial strain identifiers